; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg25086 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25086
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGTP-binding protein YPTM2-like
Genome locationCarg_Chr19:4370260..4373873
RNA-Seq ExpressionCarg25086
SyntenyCarg25086
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011491.1 Ras-related protein RABD2a [Cucurbita argyrosperma subsp. argyrosperma]1.3e-20100Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

XP_004148356.1 ras-related protein RABD2c [Cucumis sativus]3.8e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

XP_022931789.1 ras-related protein RABD2c [Cucurbita moschata]1.3e-20100Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

XP_022971849.1 ras-related protein RABD2c-like [Cucurbita maxima]3.8e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNI+GQPVNQKTGCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

XP_023554189.1 GTP-binding protein YPTM2 [Cucurbita pepo subsp. pepo]2.9e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVE+AFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

TrEMBL top hitse value%identityAlignment
A0A0A0LID7 Uncharacterized protein1.9e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

A0A1S3CQ93 ras-related protein RABD2c1.9e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

A0A5A7TAX6 Ras-related protein RABD2c1.9e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQK+GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

A0A6J1EV78 ras-related protein RABD2c6.4e-21100Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

A0A6J1I9Q5 ras-related protein RABD2c-like1.9e-2098.18Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNI+GQPVNQKTGCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

SwissProt top hitse value%identityAlignment
P28188 Ras-related protein RABD2a6.0e-1678.57Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPM-NNARPPTVNIRGQPVNQKTGCCSS
        METSAK ATNVE+AFMAM+A IK RMA+QP  NNARPPTV IRGQPV QK GCCS+
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPM-NNARPPTVNIRGQPVNQKTGCCSS

P40392 Ras-related protein RIC11.1e-1269.09Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNA-RPPTVNIRGQPVNQKTGCCS
        +ETSAK ATNVE+AFM MA EIKNRMA+QP  NA +P TV +RGQPV Q++ CCS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNA-RPPTVNIRGQPVNQKTGCCS

Q05737 GTP-binding protein YPTM21.7e-1578.57Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQP-MNNARPPTVNIRGQPVNQKTGCCSS
        METSAK+ATNV++AFMAMAA IK+RMA+QP   NARP TV IRGQPVNQKT CCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQP-MNNARPPTVNIRGQPVNQKTGCCSS

Q9FPJ4 Ras-related protein RABD2b2.0e-1676.36Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        +ETSAK+ATNVEEAFMAM A IK RMA+QP   A+PPTV IRGQPVNQ++GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

Q9SEH3 Ras-related protein RABD2c4.6e-1674.55Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        +ETSAK+ATNVEEAFMAM A IK RMA+QP   ++PPTV IRGQPVNQ++GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

Arabidopsis top hitse value%identityAlignment
AT1G02130.1 RAS 54.2e-1778.57Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPM-NNARPPTVNIRGQPVNQKTGCCSS
        METSAK ATNVE+AFMAM+A IK RMA+QP  NNARPPTV IRGQPV QK GCCS+
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPM-NNARPPTVNIRGQPVNQKTGCCSS

AT3G11730.1 Ras-related small GTP-binding family protein8.9e-0747.27Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNN--ARPPTVNIRGQPVNQKTGCC
        +ETSAK + NVE+AF+ +A EIK +M +Q   N  + P TV ++GQP+ Q  G C
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNN--ARPPTVNIRGQPVNQKTGCC

AT4G17530.1 RAB GTPase homolog 1C3.2e-1774.55Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        +ETSAK+ATNVEEAFMAM A IK RMA+QP   ++PPTV IRGQPVNQ++GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS

AT5G47200.1 RAB GTPase homolog 1A1.5e-1776.36Show/hide
Query:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS
        +ETSAK+ATNVEEAFMAM A IK RMA+QP   A+PPTV IRGQPVNQ++GCCSS
Subjt:  METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACAAGTGCTAAAAGCGCGACGAATGTGGAAGAGGCTTTCATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCGACACAGCCGATGAACAATGCAAGGCCACC
GACAGTGAACATTCGAGGACAACCTGTGAATCAGAAAACTGGTTGCTGCTCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
CTTCTCTTCATTTCTTCAATTTCTTCGTCTCTCTACCCCTCTTTTTCTCTCTTATCCGGCGACCGATCTTCCTCCGGTCAATTTTTTGCCGGCAGGTCCTCTCATCGCAT
CGATCTCTTCTCAATTACTTAACTCCGCTATCTTATTAGCCATGAATCCGGAATAGTGTTTGATTGTCAATTTGGTTGGCGATTTTGATAATCAACTTGTAATTTGTTTG
GAGTTATTTCGCGACTATTTGTTTAAGCTTCTGCTTATCGGAGACTCGGGAGTTGGAAAATCTTGTCTTCTACTGAGGTTTGCTGATGACTCATATCTCGATAGCTACAT
TAGCACCATTGGAGTTGACTTTAAAATCCGTACTGTGGAACAGGATGGAAAGACCATTAAACTTCAAATTTGGGACACTGCCGGTCAAGAACGTTTTAGAACGATTACTA
GCAGCTACTACCGTGGAGCTCATGGAATAATCGTCGTGTATGACGTTACAGATCAGGATAGCTTCAATAATGTTAAGCAATGGTTGAACGAAATAGACCGATATGCTAGT
GAAAATGTGAACAAGCTTCTGGTTGGTAATAAATGTGATCTCACTGCAAATAAGGTCGTCTCCTATGAGACAGCGAAGGCCTTTGCGGATGAAATTGGAATTCCATTCAT
GGAAACAAGTGCTAAAAGCGCGACGAATGTGGAAGAGGCTTTCATGGCCATGGCTGCTGAAATAAAGAACAGGATGGCGACACAGCCGATGAACAATGCAAGGCCACCGA
CAGTGAACATTCGAGGACAACCTGTGAATCAGAAAACTGGTTGCTGCTCTTCTTAAAGATGAATGGCTCTTATTGAATGGTTGACAGATGGTGATGGTGATGTTTATGTA
TGGACGGTGACATGTAAGACTAGTTGTCTCTCTCTCTCTCTCTCTCTATGCTTTTCGTATAAAAAGATTCGTCGGTCGTGAAATGATTTGCCTTTGCCTTTTATTTTCTC
GTCTTTTGAAGTCGAACTATGTTAACACCTCCATTCTTTCGAATATATTTGTTTCTGGATCAAACATTATTCAGGTGTAAAATTTAGATATCAATGAACAGTAGTAGTAT
TTGCTTC
Protein sequenceShow/hide protein sequence
METSAKSATNVEEAFMAMAAEIKNRMATQPMNNARPPTVNIRGQPVNQKTGCCSS