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Carg25106 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25106
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpartner of Y14 and mago-like
Genome locationCarg_Chr19:4870239..4878556
RNA-Seq ExpressionCarg25106
SyntenyCarg25106
Gene Ontology termsGO:1903259 - exon-exon junction complex disassembly (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0035145 - exon-exon junction complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR039333 - Partner of Y14 and mago


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571817.1 Partner of Y14 and mago, partial [Cucurbita argyrosperma subsp. sororia]2.9e-76100Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

KAG7011510.1 Partner of Y14 and mago [Cucurbita argyrosperma subsp. argyrosperma]2.9e-76100Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

XP_022953117.1 partner of Y14 and mago-like [Cucurbita moschata]3.2e-7598.75Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESY DNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQD+KPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

XP_023554038.1 partner of Y14 and mago-like isoform X1 [Cucurbita pepo subsp. pepo]5.5e-7598.75Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLK NS S
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

XP_023554039.1 partner of Y14 and mago-like isoform X2 [Cucurbita pepo subsp. pepo]5.5e-7598.75Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLK NS S
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

TrEMBL top hitse value%identityAlignment
A0A0A0K274 Mago-bind domain-containing protein2.4e-6083.95Show/hide
Query:  MASHDEPPGYDPPSV-VKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENP-SEPIDNLQFP
        MASHD PPGY+PP+  VK+KTKSAKRNERKKEKRLQAA EKDKVLEQVV+ EITEAKE+YVDN LEP+QSLSSQMNELSVSTN K+E+P SEPID+ Q P
Subjt:  MASHDEPPGYDPPSV-VKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENP-SEPIDNLQFP

Query:  SNDIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        S+D+DKRIRA KKKIR+AEAQLQKTPLQDMKPEQ NKLSKLE WRSELMLLEEQRLKLNS S
Subjt:  SNDIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

A0A1S3BZS1 partner of Y14 and mago isoform X21.6e-5983.33Show/hide
Query:  MASHDEPPGYDPPSV-VKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENP-SEPIDNLQFP
        MASHD PPGYDPP+  VK+KTKSAKRNERKKEKRLQAA EKDKVLEQVV+ EITEAKE+YVDN LE +QSLSSQMNEL+VSTN K+E+P SEPID+ Q P
Subjt:  MASHDEPPGYDPPSV-VKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENP-SEPIDNLQFP

Query:  SNDIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        S+D+DKRIRA KKKIR+AEAQLQKTPLQDMKPEQ NKLSKLE WRSELMLLEEQRLKLNS S
Subjt:  SNDIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

A0A6J1DY25 partner of Y14 and mago isoform X13.0e-6387.42Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENP-SEPIDNLQFPS
        MASHD PPGYDPPS  KSKTKSAKRNERKKEKRLQAA EKDK LEQVV GEITEAKESYVDNGLE  QSLSS+MN+L+VSTNPKIENP SEPID+ QFPS
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENP-SEPIDNLQFPS

Query:  NDIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNS
        NDIDKRIRAIKKKIRIAEAQLQKTP+QDMKPEQ+NKLSKLE+WRSEL LLEEQRL+LN+
Subjt:  NDIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNS

A0A6J1GMB7 partner of Y14 and mago-like1.5e-7598.75Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESY DNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQD+KPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

A0A6J1IA06 partner of Y14 and mago-like5.9e-7598.12Show/hide
Query:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN
        MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKV+EQVVIGEI EAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQ PSN
Subjt:  MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSN

Query:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
        DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS
Subjt:  DIDKRIRAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS

SwissProt top hitse value%identityAlignment
Q9LPZ4 Partner of Y14 and mago3.3e-2246.58Show/hide
Query:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI
        PPGY+P    K KTK+AKRNERKKEKRLQA  EK              +++    NG + V  L+S+M  L VS+N  +   +    N      D++KRI
Subjt:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI

Query:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ
        RA+KKKIR+ EAQ QKT  +D+ PEQ+ K SKLE WR EL  LE++
Subjt:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ

Arabidopsis top hitse value%identityAlignment
AT1G11400.1 partner of Y14-MAGO2.3e-2346.58Show/hide
Query:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI
        PPGY+P    K KTK+AKRNERKKEKRLQA  EK              +++    NG + V  L+S+M  L VS+N  +   +    N      D++KRI
Subjt:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI

Query:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ
        RA+KKKIR+ EAQ QKT  +D+ PEQ+ K SKLE WR EL  LE++
Subjt:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ

AT1G11400.2 partner of Y14-MAGO2.3e-2346.58Show/hide
Query:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI
        PPGY+P    K KTK+AKRNERKKEKRLQA  EK              +++    NG + V  L+S+M  L VS+N  +   +    N      D++KRI
Subjt:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI

Query:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ
        RA+KKKIR+ EAQ QKT  +D+ PEQ+ K SKLE WR EL  LE++
Subjt:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ

AT1G11400.3 partner of Y14-MAGO2.3e-2346.58Show/hide
Query:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI
        PPGY+P    K KTK+AKRNERKKEKRLQA  EK              +++    NG + V  L+S+M  L VS+N  +   +    N      D++KRI
Subjt:  PPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRI

Query:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ
        RA+KKKIR+ EAQ QKT  +D+ PEQ+ K SKLE WR EL  LE++
Subjt:  RAIKKKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCCATGATGAACCTCCTGGTTATGATCCTCCATCAGTTGTAAAGTCAAAGACCAAGTCAGCTAAGCGGAATGAGAGAAAGAAGGAGAAGCGGCTGCAGGCAGC
TGATGAAAAGGATAAAGTTTTGGAACAAGTGGTTATTGGAGAGATCACTGAAGCAAAGGAATCATACGTAGATAATGGGTTGGAACCTGTCCAGTCATTAAGTTCCCAGA
TGAATGAACTTTCTGTTTCTACAAATCCGAAAATTGAAAACCCTTCTGAGCCAATTGATAATCTACAGTTTCCTTCCAATGACATCGATAAGAGAATTAGAGCAATTAAA
AAAAAGATTCGAATTGCAGAAGCTCAATTGCAGAAAACACCACTGCAAGATATGAAGCCAGAGCAGATGAACAAGTTATCGAAACTCGAAAATTGGCGCTCCGAACTAAT
GCTTCTAGAAGAACAAAGGCTAAAACTAAATTCGTTGTCGTGA
mRNA sequenceShow/hide mRNA sequence
GAGGAGGAGGAGGAGGAGGTGGAGGAGAAGATCAGCTGAAGCAAATGGCGGAGCTGAGCAAAACCCTAAAAGAAGGAGAAAGGATTCTGGCGCCAACAAGGCGTCCCGAT
GGTACTCTTCGAAAACCCCTTCGGATTAGGGCTGGCTATGTTCCGCAGGATGAAGTCGCCATTTACCAATCCAAAGGGGCTCTGGACCTTCGATAGGATCATCCAGGACT
CACTTAAATCCTTGCATCATCCACAGTTCGACACACAATCAGTGTGTTGATGTGAGTGGAAAAAGGAGATGGCGTCCCATGATGAACCTCCTGGTTATGATCCTCCATCA
GTTGTAAAGTCAAAGACCAAGTCAGCTAAGCGGAATGAGAGAAAGAAGGAGAAGCGGCTGCAGGCAGCTGATGAAAAGGATAAAGTTTTGGAACAAGTGGTTATTGGAGA
GATCACTGAAGCAAAGGAATCATACGTAGATAATGGGTTGGAACCTGTCCAGTCATTAAGTTCCCAGATGAATGAACTTTCTGTTTCTACAAATCCGAAAATTGAAAACC
CTTCTGAGCCAATTGATAATCTACAGTTTCCTTCCAATGACATCGATAAGAGAATTAGAGCAATTAAAAAAAAGATTCGAATTGCAGAAGCTCAATTGCAGAAAACACCA
CTGCAAGATATGAAGCCAGAGCAGATGAACAAGTTATCGAAACTCGAAAATTGGCGCTCCGAACTAATGCTTCTAGAAGAACAAAGGCTAAAACTAAATTCGTTGTCGTG
AATCGGTGCAGTCAGAATTATTGTTCACTTCATTTATGCTTTATGATGAAGAGACCCAGAATTACTGAACCTTCTGAAAATCTAATCACCTGTAAAACTCCACCTTCTTT
TAATGTGTTGTGTAATTGCTTTCCATTCATAGTTTTAGGAAGGGCTTGAACTGTAGATAGTTTTGAAGACATTGATTTTCTTTCGCCTCAACATGATTTTTTATGTGATC
TCATATCAAAATGACCAACGAACACTTCAGCTTCTCAAAGATTATATATATATGAATTTTATTTTGAACCATTTTTACTAAGAGAAACGGTCTTGTACTTGAGGCTACGG
CTATGTGTTTTCACTCGAGTTTTTGGAGTCTT
Protein sequenceShow/hide protein sequence
MASHDEPPGYDPPSVVKSKTKSAKRNERKKEKRLQAADEKDKVLEQVVIGEITEAKESYVDNGLEPVQSLSSQMNELSVSTNPKIENPSEPIDNLQFPSNDIDKRIRAIK
KKIRIAEAQLQKTPLQDMKPEQMNKLSKLENWRSELMLLEEQRLKLNSLS