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Carg25114 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25114
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFAS1 domain-containing protein SELMODRAFT_448915-like
Genome locationCarg_Chr13:5381070..5381516
RNA-Seq ExpressionCarg25114
SyntenyCarg25114
Gene Ontology termsNA
InterPro domainsIPR000782 - FAS1 domain
IPR036378 - FAS1 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583741.1 Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-69100Show/hide
Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDK
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDK
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDK
XP_022927494.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita moschata]1.9e-77100Show/hide
Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
XP_023001077.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita maxima]3.9e-7597.28Show/hide
Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTD LESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN
        IHNHGRGHFLVNNAAVT+PNVCSSS GIKCHGIDKV+DYGNAYDNHN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN
XP_023520235.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita pepo subsp. pepo]2.7e-7698.65Show/hide
Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNL+AAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISI TDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
XP_038893487.1 FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida]1.3e-5979.73Show/hide
Query:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI
        SQ  NHT+L AA+ DM+A+SFYGFAILLQMLN TTQLTL++ITFFIP DPQLSNISI  DRLE+FVLSH IVMPL+FSDLIRFPTGSIVPSGY NRMIRI
Subjt:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI

Query:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYG-NAYDNHNN
        HNHGRGHF+VNNA V VPNVCSSSE IKCHG++KV+DYG ++Y N NN
Subjt:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYG-NAYDNHNN
TrEMBL top hitse value%identityAlignment
A0A0A0LTE3 Uncharacterized protein1.2e-4578.99Show/hide
Query:  MLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKC
        MLN TTQLTL++ITFFIP DPQ+SNISI  DRLE+FVLSH I+MPLQFSDLIRFPTGSIVPSGY NRMIRIHN+GRGHF+VNNA V VPNVCSSS GIKC
Subjt:  MLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKC

Query:  HGIDKVLDYGNA-YDNHNN
        HG++KV++YG A Y N +N
Subjt:  HGIDKVLDYGNA-YDNHNN
A0A1S3CJM9 FAS1 domain-containing protein SELMODRAFT_448915-like2.5e-5677.7Show/hide
Query:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI
        SQT N T+L AA+ DM+AQSFYGFAILLQMLN TTQLTL++ITFFIP D QLSNISI  + LE+FVLSH IVMPLQFSDLIRFPTGSIVPSGY NRMIRI
Subjt:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI

Query:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGN-AYDNHNN
        HN+GRGHF+VNNA V VPNVCSSS GIKCHG++KV++YG   Y N NN
Subjt:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGN-AYDNHNN
A0A6J1CM20 uncharacterized protein LOC1110127021.4e-5174.47Show/hide
Query:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI
        S   N T+L AA+ DMRA+SFYGFAILLQMLNATTQL LRDITFFIP D QLSNISI   RLE+FV SH I MPLQFSDLIRFPTGS+VPSG  NRMIR+
Subjt:  SQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRI

Query:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA
        HNHGR HFLVNNA VTVPNVC ++  +KCHG+++V+DYG+A
Subjt:  HNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA
A0A6J1EI57 FAS1 domain-containing protein SELMODRAFT_448915-like9.0e-78100Show/hide
Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
        IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN
A0A6J1KFG1 FAS1 domain-containing protein SELMODRAFT_448915-like1.9e-7597.28Show/hide
Query:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
        MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTD LESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR
Subjt:  MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIR

Query:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN
        IHNHGRGHFLVNNAAVT+PNVCSSS GIKCHGIDKV+DYGNAYDNHN
Subjt:  IHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHN
SwissProt top hitse value%identityAlignment
P0DH64 FAS1 domain-containing protein SELMODRAFT_4489155.0e-0929.77Show/hide
Query:  VGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNI--SIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLV
        V +M  Q F   A + Q L   T + +R  T  IP +  ++ +  ++  + + + +  H +  P  F  L R   G+ +P+  +  MI + ++  G+F +
Subjt:  VGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNI--SIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLV

Query:  NNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA
        N   +T P+VCSS+  I CHGID+VL Y ++
Subjt:  NNAAVTVPNVCSSSEGIKCHGIDKVLDYGNA
Arabidopsis top hitse value%identityAlignment
AT5G16920.1 Fasciclin-like arabinogalactan family protein4.6e-1835.92Show/hide
Query:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQL--SNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHN
        N+  L  A+ +M   +++ F +L+ ML +     L ++TF +P D  L  SNI    D +  F+L HSI   L F  L   P GSIVPS   +  + I N
Subjt:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQL--SNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHN

Query:  HGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDN
         GR ++ +NN  +   N+CS    IKCHGID +L   +  D+
Subjt:  HGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDN
AT5G26730.1 Fasciclin-like arabinogalactan family protein5.1e-2540.58Show/hide
Query:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHG
        N T+L++A+ DMR QS+ GF ILL+ LN T      DITF +P D  +S+  I  + LE+F+L H+I   L  + ++ FP  ++VP  + +RM  I   G
Subjt:  NHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHG

Query:  RGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAY
             VNNA +  PNVC +S  I CHGI  V+ +   Y
Subjt:  RGHFLVNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAAACCTTAAACCACACGAATCTCCTAGCTGCCGTTGGAGACATGAGGGCCCAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACGCCACCACCCA
ACTAACCCTAAGAGACATCACCTTCTTCATCCCCCTCGACCCTCAGCTCTCGAACATCTCCATACCGACCGACCGTCTCGAGTCGTTCGTCCTCAGTCATTCGATTGTCA
TGCCGCTGCAATTCAGTGACTTGATTCGATTTCCCACTGGTTCCATCGTTCCTTCGGGTTATCGTAATAGAATGATCAGAATCCATAACCATGGAAGAGGCCATTTTCTT
GTCAATAATGCTGCTGTCACTGTTCCTAATGTTTGTTCTAGTTCCGAGGGTATTAAGTGTCATGGGATTGATAAGGTCCTTGATTATGGTAATGCTTACGATAATCATAA
TAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAAACCTTAAACCACACGAATCTCCTAGCTGCCGTTGGAGACATGAGGGCCCAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGCTCAACGCCACCACCCA
ACTAACCCTAAGAGACATCACCTTCTTCATCCCCCTCGACCCTCAGCTCTCGAACATCTCCATACCGACCGACCGTCTCGAGTCGTTCGTCCTCAGTCATTCGATTGTCA
TGCCGCTGCAATTCAGTGACTTGATTCGATTTCCCACTGGTTCCATCGTTCCTTCGGGTTATCGTAATAGAATGATCAGAATCCATAACCATGGAAGAGGCCATTTTCTT
GTCAATAATGCTGCTGTCACTGTTCCTAATGTTTGTTCTAGTTCCGAGGGTATTAAGTGTCATGGGATTGATAAGGTCCTTGATTATGGTAATGCTTACGATAATCATAA
TAATTAA
Protein sequenceShow/hide protein sequence
MSQTLNHTNLLAAVGDMRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPLQFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFL
VNNAAVTVPNVCSSSEGIKCHGIDKVLDYGNAYDNHNN