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Carg25117 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25117
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCytosolic Fe-S cluster assembly factor narfl
Genome locationCarg_Chr13:5396205..5396605
RNA-Seq ExpressionCarg25117
SyntenyCarg25117
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583743.1 Protein NAR1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2698.51Show/hide
Query:  MEMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        +EMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
Subjt:  MEMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

KAG7019384.1 Protein NAR1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-27100Show/hide
Query:  MEMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLACR
        MEMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLACR
Subjt:  MEMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLACR

XP_022927572.1 protein NAR1-like [Cucurbita moschata]2.2e-2598.46Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVS SRKQLKAEPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

XP_023001117.1 protein NAR1-like [Cucurbita maxima]7.6e-26100Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

XP_023520381.1 protein NAR1-like [Cucurbita pepo subsp. pepo]3.8e-2598.46Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQ KAEPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

TrEMBL top hitse value%identityAlignment
A0A0A0LVS1 Fe_hyd_SSU domain-containing protein3.1e-2595.45Show/hide
Query:  EMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        EMSEKFSATLRIGDLND+IAPSQACIVSLKGLKAT+TKPDKVEVSASR QLKAEPVKISLKDCLAC
Subjt:  EMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

A0A5D3E5I9 Cytosolic Fe-S cluster assembly factor narfl3.1e-2595.45Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLACR
        MSEKFSATLRIGDLND+IAPSQACIVSLKGLKAT+TKPDKVEVSASR QLKAEPVKISLKDCLACR
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLACR

A0A6J1CNT4 protein NAR12.4e-2596.92Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFSATLRIGDLND+IAPSQACIVSLKGLKAT+TKPDKVEVSASRKQLKAEPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

A0A6J1EHJ5 protein NAR1-like1.1e-2598.46Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVS SRKQLKAEPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

A0A6J1KFK6 protein NAR1-like3.7e-26100Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

SwissProt top hitse value%identityAlignment
A4FV58 Cytosolic iron-sulfur assembly component 31.7e-0439.19Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKV---------EVSASRKQLKAEPVKISLKDCLAC
        M+  FS  L++ DL+D+IAPSQ CI  +K  +   +   K+         +VS      K E  KISL DCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKV---------EVSASRKQLKAEPVKISLKDCLAC

B4GXC8 Probable cytosolic Fe-S cluster assembly factor GL211351.3e-0442.25Show/hide
Query:  KFSATLRIGDLNDYIAPSQACI---------VSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        +FS  L++ DL+D+I PSQ CI          S  G K T  +    E S S KQ K + V+I+L+DCLAC
Subjt:  KFSATLRIGDLNDYIAPSQACI---------VSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

B5DK31 Probable cytosolic Fe-S cluster assembly factor GA290801.3e-0442.25Show/hide
Query:  KFSATLRIGDLNDYIAPSQACI---------VSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        +FS  L++ DL+D+I PSQ CI          S  G K T  +    E S S KQ K + V+I+L+DCLAC
Subjt:  KFSATLRIGDLNDYIAPSQACI---------VSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

Q7TMW6 Cytosolic iron-sulfur assembly component 31.7e-0436.49Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKV---------EVSASRKQLKAEPVKISLKDCLAC
        M+  FS  L++ DL+D+I PSQ CI  +K  K   +   K+         +V+   +  K E  K+SL DCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKV---------EVSASRKQLKAEPVKISLKDCLAC

Q94CL6 Protein NAR12.1e-1566.15Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFS TLR+GDLND+IAPSQAC++SLK  K    K D+ +V  + KQ + EPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC

Arabidopsis top hitse value%identityAlignment
AT4G16440.1 ferredoxin hydrogenases1.5e-1666.15Show/hide
Query:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC
        MSEKFS TLR+GDLND+IAPSQAC++SLK  K    K D+ +V  + KQ + EPVKISLKDCLAC
Subjt:  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLAC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGTCTGAGAAATTCTCGGCAACATTGAGGATCGGGGATCTGAATGATTATATAGCGCCTTCCCAGGCTTGCATAGTTTCTCTCAAGGGGCTTAAAGCCACTTC
CACGAAGCCGGATAAAGTTGAGGTTTCAGCTTCTAGAAAGCAATTGAAAGCTGAACCAGTTAAGATATCACTCAAGGATTGCTTAGCATGCAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGTCTGAGAAATTCTCGGCAACATTGAGGATCGGGGATCTGAATGATTATATAGCGCCTTCCCAGGCTTGCATAGTTTCTCTCAAGGGGCTTAAAGCCACTTC
CACGAAGCCGGATAAAGTTGAGGTTTCAGCTTCTAGAAAGCAATTGAAAGCTGAACCAGTTAAGATATCACTCAAGGATTGCTTAGCATGCAGGTAA
Protein sequenceShow/hide protein sequence
MEMSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLKDCLACR