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Carg25167 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25167
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationCarg_Chr06:4186584..4187597
RNA-Seq ExpressionCarg25167
SyntenyCarg25167
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596855.1 Root meristem growth factor 6, partial [Cucurbita argyrosperma subsp. sororia]4.9e-42100Show/hide
Query:  MISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        MISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  MISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-63100Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVN
        MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVN
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        SEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]7.8e-5689.31Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDR--DKDIDKV
        MPMPTSLFL+LLFLSTFLHACDARLLKLCHSSRLE CMISPGFR +QL++SLD+S+SN+VSS+ENVGIEILKGMKKLRRLAMELPVRD DR  DKDIDKV
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDR--DKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]4.0e-6094.57Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVN
        MPMPTS FL+LLFLSTFLHACDARLLKLCHSSRLE C+ISPGFRTNQLE+SLDES+SNDVSSMENVGIEILKGMKKLRRLAMELPVRD DRDKDIDKVVN
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        SEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]2.3e-2357.36Show/hide
Query:  LFLSLLFLSTFLHACDARLLKLCHS----SRLEPCMISPGFRTNQLEKSLDESRSNDVSSME-NVGIEILKGMKKL-RRLAMELPVRDIDRDKDIDKVVN
        LFL LL  S+ LHAC+AR L+   S    SR+EP  IS G   +Q E+S +ES S+ +S  E  VGIE+LKGMKK   RL ME P++        +KV+N
Subjt:  LFLSLLFLSTFLHACDARLLKLCHS----SRLEPCMISPGFRTNQLEKSLDESRSNDVSSME-NVGIEILKGMKKL-RRLAMELPVRDIDRDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        S+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein1.2e-1749.64Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRL-----EPCMISPGFRT--NQLEKSLDESRSNDV-SSMEN-VGIEILKGMKK-LRRLAMELPVRDID
        M MP   FL LLF S+ LHACDA  L+   SS       E   +S G  +  +  E S D++ ++++  + EN +GIE+LKGMK+   RL ME P++   
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRL-----EPCMISPGFRT--NQLEKSLDESRSNDV-SSMEN-VGIEILKGMKK-LRRLAMELPVRDID

Query:  RDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
             +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  RDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A438K320 Uncharacterized protein1.6e-0637.8Show/hide
Query:  SLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGF-RTNQLEK-SLDESRSNDVSSMENV-GIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSE
        S  L LL LS  +HAC+AR L +      E  ++S      +Q+ K SL       + + E +   +IL G K+  RL +           D+++ V+S+
Subjt:  SLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGF-RTNQLEK-SLDESRSNDVSSMENV-GIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSE

Query:  ENEVGEDMVVMDYAQPHRKPPIHNQKP
        E ++ ED+VVMDYAQPHRKPPIHN+ P
Subjt:  ENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A5J4ZYW1 Uncharacterized protein1.0e-0538.46Show/hide
Query:  FRTNQLEKSLDESRSNDVSSMENVGIEILKG--MKKLRRLAMELPVRD--IDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        F+T   E + + +   D +  E +   +L+G   +  + +  +   R   +    D  + VNSEEN+V ED+VVMDYAQPHRKPPIHN++P
Subjt:  FRTNQLEKSLDESRSNDVSSMENVGIEILKG--MKKLRRLAMELPVRD--IDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A6J1DKL1 uncharacterized protein LOC1110213961.7e-1952.63Show/hide
Query:  MPTSLFLSLLFLSTFLHACDA--RLLKLCHSSRLEP----CMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDID
        M T   L +L LST LHACDA  RL    +S+ +        I   FRT+Q E+SL+++  + VSS   +GI ILKGMKK +RLAME  +      K+ +
Subjt:  MPTSLFLSLLFLSTFLHACDA--RLLKLCHSSRLEP----CMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDID

Query:  KVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A6J1KZM9 uncharacterized protein LOC1114985213.8e-5689.31Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDR--DKDIDKV
        MPMPTSLFL+LLFLSTFLHACDARLLKLCHSSRLE CMISPGFR +QL++SLD+S+SN+VSS+ENVGIEILKGMKKLRRLAMELPVRD DR  DKDIDKV
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDR--DKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 11.9e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNQK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNQK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.3e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNQK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGCCAACTTCTTTGTTCCTCTCTCTCCTATTCTTGTCGACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGACTCGAACCGTG
TATGATCTCTCCAGGGTTTCGAACGAATCAACTCGAGAAAAGTTTGGACGAAAGCAGAAGTAACGACGTTTCTTCCATGGAGAATGTTGGGATTGAAATATTGAAGGGAA
TGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACATAGACAGAGACAAAGACATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATG
GTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATTCCAAAGCAAAACAAAACCCTTCTTCTCTATTTCTCTTTCCATTTCCATGCCCATGCCAACTTCTTTGTTCCTCTCTCTCCTATTCTTGTCGACTTTTTTGCATGCAT
GCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGACTCGAACCGTGTATGATCTCTCCAGGGTTTCGAACGAATCAACTCGAGAAAAGTTTGGACGAAAGCAGAAGT
AACGACGTTTCTTCCATGGAGAATGTTGGGATTGAAATATTGAAGGGAATGAAGAAGCTTAGAAGGTTGGCAATGGAGCTTCCAGTGAGAGACATAGACAGAGACAAAGA
CATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCAAAAACCCTAGC
TCACAATTTAATATGATCTCTTCCCAATTTCCTATGATGTTCAAAATATGTTCCAAAAATCAATGTATTGTATCTAAGGGTTTACTATATTCAAGATTTTTGTGTTAAAT
AAAAGCATGCATTAAAGATATTTTTGTATGATCCATTGGATAAATATGT
Protein sequenceShow/hide protein sequence
MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLEPCMISPGFRTNQLEKSLDESRSNDVSSMENVGIEILKGMKKLRRLAMELPVRDIDRDKDIDKVVNSEENEVGEDM
VVMDYAQPHRKPPIHNQKP