; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg25288 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25288
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionycf49-like protein
Genome locationCarg_Chr16:8332889..8336846
RNA-Seq ExpressionCarg25288
SyntenyCarg25288
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019634 - Uncharacterised protein family Ycf49


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577584.1 hypothetical protein SDJN03_25158, partial [Cucurbita argyrosperma subsp. sororia]1.0e-9999.49Show/hide
Query:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT
        MMSFSSTFLHSFSIPKCPISSSS SSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT
Subjt:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT

Query:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
Subjt:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

KAG7015633.1 hypothetical protein SDJN02_23270, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-100100Show/hide
Query:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT
        MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT
Subjt:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT

Query:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
Subjt:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

XP_022923292.1 uncharacterized protein LOC111431033 [Cucurbita moschata]7.6e-9596.41Show/hide
Query:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT
        +MSFSSTFLHSFSIPKCPI SSSSSSLPTSR SAATSQLPTGIRLRRGGA RVLDSKSI+VLLGTGFTLS LGPA PSAATEFQSSLLFNEPQNALSLPT
Subjt:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT

Query:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
Subjt:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

XP_022965189.1 uncharacterized protein LOC111465121 [Cucurbita maxima]1.2e-9292.54Show/hide
Query:  MSFSSTFLHSFSIPKCPI-------SSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQN
        MSFSSTFLHSFSIPKC I       SSSSSSSLPTSRD AATSQLPTGIRLRRG A RVLDSKSI+VLLGTGFTLSLL PALPSAATEFQSSLLFNEPQN
Subjt:  MSFSSTFLHSFSIPKCPI-------SSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQN

Query:  ALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKN
        ALSLPTWA+HVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLV LQAMLTVIGNATMCIAAFRIYKSSQERSKN
Subjt:  ALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKN

Query:  L
        L
Subjt:  L

XP_023551730.1 uncharacterized protein LOC111809617 [Cucurbita pepo subsp. pepo]6.4e-9495.36Show/hide
Query:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTW
        MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGA RVLDSKSI+VL+GTGFT SLLGP   SAATEFQSSLLFNEPQNALSLPTW
Subjt:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTW

Query:  AVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        AVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVP LGGA CACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
Subjt:  AVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

TrEMBL top hitse value%identityAlignment
A0A1S3BLS2 ycf49-like protein1.4e-7377.84Show/hide
Query:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTW
        MS +S  L+SFSIPK P        LP S D A T+QLPTG+  RR  +     SK++VVLLGTGFTL+LLGP   SAATE QSSLLFNEPQNALSLPTW
Subjt:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTW

Query:  AVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        A+HVS VVEWI AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVA+QAMLT IGNATMCIAAFRIYKSSQERSKNL
Subjt:  AVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

A0A6J1DH09 uncharacterized protein LOC1110204151.9e-7580.4Show/hide
Query:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRR-GGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQ----SSLLFNEPQNAL
        M  +ST LHSFS PKCPISSSSSSS P SRD AA S+ P GIR RR  GA  VLDSKS+VVLLGTGFTL+LLGP   SAA E Q    SSL FNEPQNAL
Subjt:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRR-GGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQ----SSLLFNEPQNAL

Query:  SLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        SLPTWA+HVS VVEWI AMALVWQYGEKSGNE+WKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVALQA+LT +GNATMCIAAFRIYK SQERS+NL
Subjt:  SLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

A0A6J1E5R7 uncharacterized protein LOC1114310333.7e-9596.41Show/hide
Query:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT
        +MSFSSTFLHSFSIPKCPI SSSSSSLPTSR SAATSQLPTGIRLRRGGA RVLDSKSI+VLLGTGFTLS LGPA PSAATEFQSSLLFNEPQNALSLPT
Subjt:  MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPT

Query:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
        WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL
Subjt:  WAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL

A0A6J1HN17 uncharacterized protein LOC1114651215.8e-9392.54Show/hide
Query:  MSFSSTFLHSFSIPKCPI-------SSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQN
        MSFSSTFLHSFSIPKC I       SSSSSSSLPTSRD AATSQLPTGIRLRRG A RVLDSKSI+VLLGTGFTLSLL PALPSAATEFQSSLLFNEPQN
Subjt:  MSFSSTFLHSFSIPKCPI-------SSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQN

Query:  ALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKN
        ALSLPTWA+HVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLV LQAMLTVIGNATMCIAAFRIYKSSQERSKN
Subjt:  ALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKN

Query:  L
        L
Subjt:  L

A0A6J1KVA7 uncharacterized protein LOC1114985078.8e-7378.22Show/hide
Query:  MSFSSTFLHSFSIPKCPISSSSSSSLPTS-RDSAATSQLPTGIRLRR-GGADRVLDSKSIVVLLGTGFTLSLLGP--ALPSAATEFQ----SSLLFNEPQ
        MS +ST LHSFS PKCPISSSSSSSLP S  D AA+SQ  TGIR  R  GA   LDSK++VVL+GTG TL+LLGP  A  +AATE Q    SSL FNEPQ
Subjt:  MSFSSTFLHSFSIPKCPISSSSSSSLPTS-RDSAATSQLPTGIRLRR-GGADRVLDSKSIVVLLGTGFTLSLLGP--ALPSAATEFQ----SSLLFNEPQ

Query:  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSK
        NALSLPTWA+HVS VVEWI AMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACT HFFYNSESLEVLVALQA+LT +GNATMCIAAFRIYK+SQERS 
Subjt:  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSK

Query:  NL
         L
Subjt:  NL

SwissProt top hitse value%identityAlignment
P15811 Uncharacterized protein ycf494.3e-0835.64Show/hide
Query:  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSK
        N LS  TW VH+S V+EW+  +     Y +   N S K   +        A CACTLHFF N      L+ LQ+ LT+  N T+  +   IYK    +++
Subjt:  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSK

Query:  N
        N
Subjt:  N

Q55720 Ycf49-like protein7.0e-2758.59Show/hide
Query:  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERS
        NALS+PTW VHVS V+EWI A+ALV +Y  K+G   W+ L+WGMVP L  A CACT HFF N+  L+ LV LQA+ TVIGN T+C+AA+ IY+ S + S
Subjt:  NALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERS

Arabidopsis top hitse value%identityAlignment
AT4G22830.1 unknown protein2.5e-4356.02Show/hide
Query:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALP--SAATEFQSSLLFNEPQNALSLP
        M+ +ST    F   K       S S P S  S  TS  P  IR+R      + D  ++  L+GT    +    A P  +A      SL  +EP NALSLP
Subjt:  MSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALP--SAATEFQSSLLFNEPQNALSLP

Query:  TWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQE
        TWAVHVS VVEWI AMALVW+YGE+ G ESWKGLSWGMVPLLGGA CACT HFFYN ESLEVLVALQA LTV GN T+CIAAFRI K S +
Subjt:  TWAVHVSIVVEWIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQE

AT4G22830.2 unknown protein3.8e-4459.51Show/hide
Query:  SRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALP--SAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGN
        S  S+ T+     IR+R      + D  ++  L+GT    +    A P  +A      SL  +EP NALSLPTWAVHVS VVEWI AMALVW+YGE+ G 
Subjt:  SRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALP--SAATEFQSSLLFNEPQNALSLPTWAVHVSIVVEWIAAMALVWQYGEKSGN

Query:  ESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQE
        ESWKGLSWGMVPLLGGA CACT HFFYN ESLEVLVALQA LTV GN T+CIAAFRI K S +
Subjt:  ESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTC
TCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGAC
CTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAA
TGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCCTTGCTAGGTGGAGCATTTTGTGC
TTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCA
TATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTCGTTCTCTTCCACCTTCTTACATTCTTTCTCAATCCCCAAATGCCCCATTTCTTCTTCTTCTTCTTCCTCACTGCCCACGTCCAGAGATTCTGCCGCTACTTC
TCAACTTCCTACCGGAATTCGACTCCGGAGAGGCGGCGCCGATCGGGTTTTGGACTCGAAATCCATCGTCGTTTTGCTCGGCACTGGTTTCACTCTCTCCCTTCTTGGAC
CTGCATTGCCTTCTGCTGCGACGGAATTCCAGTCTTCGCTTCTGTTTAACGAGCCCCAAAATGCTCTGTCCTTGCCCACCTGGGCCGTACATGTTTCCATCGTCGTTGAA
TGGATTGCAGCAATGGCTTTGGTGTGGCAGTATGGAGAGAAATCTGGCAATGAGTCTTGGAAAGGACTTTCTTGGGGAATGGTACCCTTGCTAGGTGGAGCATTTTGTGC
TTGCACATTGCATTTTTTCTACAATTCTGAGTCTCTTGAGGTATTGGTGGCCCTTCAGGCAATGCTAACGGTTATAGGAAATGCTACAATGTGCATTGCTGCATTTCGCA
TATACAAATCATCACAAGAGCGTTCAAAGAACTTGTAA
Protein sequenceShow/hide protein sequence
MMSFSSTFLHSFSIPKCPISSSSSSSLPTSRDSAATSQLPTGIRLRRGGADRVLDSKSIVVLLGTGFTLSLLGPALPSAATEFQSSLLFNEPQNALSLPTWAVHVSIVVE
WIAAMALVWQYGEKSGNESWKGLSWGMVPLLGGAFCACTLHFFYNSESLEVLVALQAMLTVIGNATMCIAAFRIYKSSQERSKNL