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Carg25294 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25294
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlight-regulated protein-like
Genome locationCarg_Chr11:10519712..10520786
RNA-Seq ExpressionCarg25294
SyntenyCarg25294
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588864.1 Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4893.27Show/hide
Query:  TRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL
        T +  Y+ VIINYARIDLYT VRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL
Subjt:  TRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL

Query:  NGIF
        NGIF
Subjt:  NGIF

KAG7022624.1 Light-regulated protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-58100Show/hide
Query:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG
        SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG
Subjt:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG

Query:  EFCGAEFLNGIF
        EFCGAEFLNGIF
Subjt:  EFCGAEFLNGIF

XP_016900821.1 PREDICTED: light-regulated protein isoform X3 [Cucumis melo]6.6e-2766.35Show/hide
Query:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL
        I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  AVA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFL
Subjt:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL

Query:  NGIF
        NG+F
Subjt:  NGIF

XP_022928578.1 light-regulated protein-like [Cucurbita moschata]7.0e-3772.32Show/hide
Query:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG
        SR+         +Y   +++Y+ +         VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYL YAAQSKTVFPGEACDDLGG
Subjt:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG

Query:  EFCGAEFLNGIF
        EFCGAEFLNG+F
Subjt:  EFCGAEFLNGIF

XP_023531712.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]6.0e-3671.43Show/hide
Query:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG
        SR+         +Y   +++Y+ +         VFPAEACETIGGEACWANIFPEVRLQASADS EAAAVALEEIDREYL YAAQSKTVFPGEACDDLGG
Subjt:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG

Query:  EFCGAEFLNGIF
        EFCGAEFLNG+F
Subjt:  EFCGAEFLNGIF

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein5.6e-2460.19Show/hide
Query:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEAC-WANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLN
        I + A V+ + + +D  + +   VFPAEACETIGGEAC W N+FPEVRLQ ++ +++    + EEIDREYL Y A SKTVFPGEACDDLGGEFC  EFLN
Subjt:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEAC-WANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLN

Query:  GIF
        G+F
Subjt:  GIF

A0A1S3BND3 light-regulated protein isoform X23.2e-2766.35Show/hide
Query:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL
        I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  AVA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFL
Subjt:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL

Query:  NGIF
        NG+F
Subjt:  NGIF

A0A1S4DXW1 light-regulated protein isoform X33.2e-2766.35Show/hide
Query:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL
        I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  AVA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFL
Subjt:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL

Query:  NGIF
        NG+F
Subjt:  NGIF

A0A5A7VMP8 Light-regulated protein isoform X23.2e-2766.35Show/hide
Query:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL
        I + A V+ + + +D  + +   VFPAEACETIGGEA CWAN+FPEVRLQ S ++++  AVA LEEIDREYL YAA SKTVF GEACDDLGGEFC AEFL
Subjt:  IDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEA-CWANIFPEVRLQASADSDEAAAVA-LEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFL

Query:  NGIF
        NG+F
Subjt:  NGIF

A0A6J1EPG4 light-regulated protein-like3.4e-3772.32Show/hide
Query:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG
        SR+         +Y   +++Y+ +         VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYL YAAQSKTVFPGEACDDLGG
Subjt:  SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGG

Query:  EFCGAEFLNGIF
        EFCGAEFLNG+F
Subjt:  EFCGAEFLNGIF

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic1.2e-1549.45Show/hide
Query:  ARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGA
        A V +  A +D  + +   VFP EAC+ IGGEAC   ++PE +L +SA +   +  A EE+DR+YL Y  +  TVFP EACDDLGGEFC A
Subjt:  ARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGA

Q96500 Light-regulated protein 1, chloroplastic3.0e-1458.11Show/hide
Query:  VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEF
        VFPAEACE I G AC A+I+PEV+L     S     VA E +DREY  Y +  KTVF  EACDDLGGEFC  +F
Subjt:  VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEF

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like2.1e-1558.11Show/hide
Query:  VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEF
        VFPAEACE I G AC A+I+PEV+L     S     VA E +DREY  Y +  KTVF  EACDDLGGEFC  +F
Subjt:  VFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGAGACAGGGTGTAACAAACTATACTCGAATTGACTCTTATGCTCGGGTTATAATAAATTATGCTCGAATTGACCTGTATACTTGGGTTCGAGACGGGGTGTTTCCTGC
AGAAGCATGTGAGACCATTGGTGGAGAAGCTTGCTGGGCCAACATTTTCCCAGAAGTGAGGCTTCAGGCTTCTGCAGATAGCGATGAAGCAGCCGCAGTTGCCTTGGAAG
AGATTGATAGAGAGTATCTTCATTATGCTGCCCAGTCTAAGACAGTTTTTCCCGGGGAGGCTTGCGATGATCTTGGTGGAGAATTTTGTGGAGCCGAGTTTCTAAATGGC
ATTTTCTAA
mRNA sequenceShow/hide mRNA sequence
TCGAGACAGGGTGTAACAAACTATACTCGAATTGACTCTTATGCTCGGGTTATAATAAATTATGCTCGAATTGACCTGTATACTTGGGTTCGAGACGGGGTGTTTCCTGC
AGAAGCATGTGAGACCATTGGTGGAGAAGCTTGCTGGGCCAACATTTTCCCAGAAGTGAGGCTTCAGGCTTCTGCAGATAGCGATGAAGCAGCCGCAGTTGCCTTGGAAG
AGATTGATAGAGAGTATCTTCATTATGCTGCCCAGTCTAAGACAGTTTTTCCCGGGGAGGCTTGCGATGATCTTGGTGGAGAATTTTGTGGAGCCGAGTTTCTAAATGGC
ATTTTCTAA
Protein sequenceShow/hide protein sequence
SRQGVTNYTRIDSYARVIINYARIDLYTWVRDGVFPAEACETIGGEACWANIFPEVRLQASADSDEAAAVALEEIDREYLHYAAQSKTVFPGEACDDLGGEFCGAEFLNG
IF