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Carg25319 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25319
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCarg_Chr11:10361724..10362812
RNA-Seq ExpressionCarg25319
SyntenyCarg25319
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588842.1 hypothetical protein SDJN03_17407, partial [Cucurbita argyrosperma subsp. sororia]1.5e-7398.58Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHIL+ELPNSQDLVCVTPTTSEVKFSHESKEV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLS KTCT
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

KAG7022599.1 hypothetical protein SDJN02_16333, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-74100Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

XP_022928487.1 uncharacterized protein LOC111435280 isoform X3 [Cucurbita moschata]2.6e-6892.2Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYKMTLTFE STPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHIL+ELPNSQDLVCVTPTTSEVKFSHESKEV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAG+CT +GYEGCVDT+FK+VL+PR FF DLSSKT T
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

XP_022989731.1 uncharacterized protein LOC111486730 [Cucurbita maxima]1.4e-6993.62Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYK+TLTFE STPPGRVPRSNSRALPLSPT AMDFG+PLL+KHFTIKPE FRHIL+ELPNSQD+VCVTPTTSEVKFSHES EV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

XP_023532026.1 uncharacterized protein LOC111794114 [Cucurbita pepo subsp. pepo]3.8e-7296.45Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYKMTLTFE STPPGRVPRSNSRALPLSPTQAMDFGRPLL+KHFTIKPECFRHIL+ELPNSQDLVCVTPTTSEVKFSHESKEV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAGQCT+VGYEGCVDTQFKIVLHPRTFFFDLS KTCT
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

TrEMBL top hitse value%identityAlignment
A0A6J1EK29 uncharacterized protein LOC111435280 isoform X31.2e-6892.2Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYKMTLTFE STPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHIL+ELPNSQDLVCVTPTTSEVKFSHESKEV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAG+CT +GYEGCVDT+FK+VL+PR FF DLSSKT T
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

A0A6J1EKE7 uncharacterized protein LOC111435280 isoform X29.5e-4568.79Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAAT FDT++ITLPS Y M LTFE S    RV +S+ RALP+SP+  MDF +P+L+KHFTIK ECFR IL ELP  QDLV VTPT SEVKFS+E KE+
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        IL+ EAG+CT +GYEGCVDT+FK+VL+PR FF DLSSKT T
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

A0A6J1ERT1 uncharacterized protein LOC111435280 isoform X13.2e-4870.92Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAAT FDT++ITLPS Y M LTFE STP GRV +S+ RALP+SP+  MDF +P+L+KHFTIK ECFR IL ELP  QDLV VTPT SEVKFS+E KE+
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        IL+ EAG+CT +GYEGCVDT+FK+VL+PR FF DLSSKT T
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

A0A6J1JKX5 uncharacterized protein LOC1114867112.2e-4970.92Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDT++ITLPS Y M LTFE STP GRVP+S+ RALP+SP+  +DF +P+L+KHFTIK ECFR +L+ELP  QDLV VTPT SEVKFS+E KE+
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        IL+ EAG+CT +GYEGCVDTQFK+VL+PR FF  LSSKT T
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

A0A6J1JKZ5 uncharacterized protein LOC1114867306.6e-7093.62Show/hide
Query:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV
        MTAAATRFDTMSITLPSPYK+TLTFE STPPGRVPRSNSRALPLSPT AMDFG+PLL+KHFTIKPE FRHIL+ELPNSQD+VCVTPTTSEVKFSHES EV
Subjt:  MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEV

Query:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
        ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT
Subjt:  ILTPEAGQCTTVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCCGCTGCTACCCGCTTTGATACAATGAGTATCACTCTTCCAAGCCCTTATAAAATGACCCTTACATTCGAGATATCAACTCCTCCAGGGCGTGTGCCTCGGTC
GAATTCACGTGCGCTGCCACTGTCACCTACGCAAGCGATGGATTTTGGAAGGCCTTTACTCTCAAAACATTTCACCATTAAACCCGAATGTTTTAGACACATTCTTTCCG
AACTACCTAACTCACAAGATTTAGTTTGTGTTACTCCAACGACATCCGAAGTCAAATTCTCACATGAATCCAAAGAGGTTATTCTTACTCCAGAGGCTGGACAATGTACA
ACCGTGGGTTATGAAGGATGTGTTGATACTCAGTTCAAAATTGTTCTTCATCCGAGGACGTTTTTCTTTGATTTGTCATCTAAAACGTGCACA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCCGCTGCTACCCGCTTTGATACAATGAGTATCACTCTTCCAAGCCCTTATAAAATGACCCTTACATTCGAGATATCAACTCCTCCAGGGCGTGTGCCTCGGTC
GAATTCACGTGCGCTGCCACTGTCACCTACGCAAGCGATGGATTTTGGAAGGCCTTTACTCTCAAAACATTTCACCATTAAACCCGAATGTTTTAGACACATTCTTTCCG
AACTACCTAACTCACAAGATTTAGTTTGTGTTACTCCAACGACATCCGAAGTCAAATTCTCACATGAATCCAAAGAGGTTATTCTTACTCCAGAGGCTGGACAATGTACA
ACCGTGGGTTATGAAGGATGTGTTGATACTCAGTTCAAAATTGTTCTTCATCCGAGGACGTTTTTCTTTGATTTGTCATCTAAAACGTGCACA
Protein sequenceShow/hide protein sequence
MTAAATRFDTMSITLPSPYKMTLTFEISTPPGRVPRSNSRALPLSPTQAMDFGRPLLSKHFTIKPECFRHILSELPNSQDLVCVTPTTSEVKFSHESKEVILTPEAGQCT
TVGYEGCVDTQFKIVLHPRTFFFDLSSKTCT