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Carg25390 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25390
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPMD domain-containing protein
Genome locationCarg_Chr16:5271593..5272888
RNA-Seq ExpressionCarg25390
SyntenyCarg25390
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577368.1 hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sororia]1.9e-74100Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022929232.1 uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata]3.1e-6982.29Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT  
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022929236.1 uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata]5.5e-7499.31Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022984567.1 uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima]1.6e-7398.62Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_023552325.1 uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo]3.3e-7197.24Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQT IGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF S NTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

TrEMBL top hitse value%identityAlignment
A0A6J1EM82 uncharacterized protein LOC111435885 isoform X11.5e-6982.29Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT  
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1EMJ9 uncharacterized protein LOC111435885 isoform X22.6e-7499.31Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1FV27 uncharacterized protein LOC1114475413.2e-6489.04Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFISPNTV
        MSE+GSERSKSWNIYTT +QSP SSQTGIGQ+APWK+FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTS FSSS EVTNN A+SGP EKF SPNTV
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFISPNTV

Query:  PTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        PTSYA+DFSVLMPGQ IPTFIAQPAPLPCQRE  YWPSHDHNFLGP
Subjt:  PTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1J2I5 uncharacterized protein LOC111482824 isoform X27.7e-7498.62Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1JAW6 uncharacterized protein LOC111482824 isoform X14.4e-6981.71Show/hide
Query:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--
        MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNT  
Subjt:  MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09812.1 unknown protein8.5e-2551.13Show/hide
Query:  RSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSPFSSSEVTNNSAESGPAE---KFISPNTVPTSY
        +S SW+IY+  E            E PW+S  +SMNAISFGFVATAILISMFLIMAIFEHLFRP  S F S          G ++        + VP S 
Subjt:  RSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSPFSSSEVTNNSAESGPAE---KFISPNTVPTSY

Query:  ASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWP
          D SV+MPG+ +P+ IA PAPLPC+RE I+WP
Subjt:  ASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWP

AT1G11120.1 unknown protein2.0e-1840.38Show/hide
Query:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------------------------------FSSSEVTNN------S
        P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+                               + S + +NN      S
Subjt:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------------------------------FSSSEVTNN------S

Query:  AESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDH
             +E FI      T Y++  SVLMPG DIPTFIA PAP+PC  + I    H H
Subjt:  AESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDH

AT1G11120.2 unknown protein1.5e-2146.15Show/hide
Query:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNS----------AESGPAEKFISPNTVPTSYASDFSVL
        P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++  +++S            +G A K    +   T Y++  SVL
Subjt:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNS----------AESGPAEKFISPNTVPTSYASDFSVL

Query:  MPGQDIPTFIAQPAPLPCQRERIYWPSHDH
        MPG DIPTFIA PAP+PC  + I    H H
Subjt:  MPGQDIPTFIAQPAPLPCQRERIYWPSHDH

AT1G58007.1 unknown protein1.5e-2148.87Show/hide
Query:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS
        S   ++W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI EHLFR +   SS +V ++S     AEK    + VP +  S
Subjt:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS

Query:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH
        D SV+MPG  +P+++A PAP PC+RE I WPSH
Subjt:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH

AT1G58007.2 unknown protein1.5e-2148.87Show/hide
Query:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS
        S   ++W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI EHLFR +   SS +V ++S     AEK    + VP +  S
Subjt:  SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS

Query:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH
        D SV+MPG  +P+++A PAP PC+RE I WPSH
Subjt:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGGTTGGTTCTGAAAGATCAAAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAG
CTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTC
CTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTG
ATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAGGTTGGTTCTGAAAGATCAAAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAG
CTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTC
CTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTG
ATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA
Protein sequenceShow/hide protein sequence
MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVL
MPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP