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Carg25403 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25403
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPSI-F
Genome locationCarg_Chr18:3681706..3683137
RNA-Seq ExpressionCarg25403
SyntenyCarg25403
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003666 - Photosystem I PsaF, reaction centre subunit III
IPR036577 - Photosystem I PsaF, reaction centre subunit III superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573443.1 Photosystem I reaction center subunit III, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.2e-8486.41Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW----------------------------EIGKVEERLTSGMGVGEIC
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW                            EIGKVEERLTSGMGVGEIC
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW----------------------------EIGKVEERLTSGMGVGEIC

Query:  VFQLGT
        VFQLGT
Subjt:  VFQLGT

KAG7012588.1 Photosystem I reaction center subunit III, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-88100Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWEIGKVEERLTSGMGVGEICVFQLGT
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWEIGKVEERLTSGMGVGEICVFQLGT
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWEIGKVEERLTSGMGVGEICVFQLGT

XP_022955103.1 photosystem I reaction center subunit III, chloroplastic [Cucurbita moschata]2.0e-73100Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

XP_022994929.1 photosystem I reaction center subunit III, chloroplastic [Cucurbita maxima]2.9e-6997.39Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN   E ASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

XP_023542340.1 photosystem I reaction center subunit III, chloroplastic [Cucurbita pepo subsp. pepo]2.0e-73100Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

TrEMBL top hitse value%identityAlignment
A0A0A0M3X2 PSI-F4.7e-6590.2Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSS LA K +PSSSILCSA+QNQN   +N SSSLQAFSAALALSSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SLKNYAPDSAPALAI+A++EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

A0A1S3C8V6 PSI-F3.4e-6388.89Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALALSSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        +LKNYAPDSAPALAI+A++EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

A0A5D3E1S6 PSI-F3.4e-6388.89Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPK SS LA K +PSSSILCSA  NQN S +N SSSLQAFSAALALSSILLSAPLPAVADI+GLTPCK+SKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        +LKNYAPDSAPALAI+A++EKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

A0A6J1GT12 PSI-F9.5e-74100Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

A0A6J1K487 PSI-F1.4e-6997.39Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
        MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQN   E ASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES
Subjt:  MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLES

Query:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
Subjt:  SLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

SwissProt top hitse value%identityAlignment
P12355 Photosystem I reaction center subunit III, chloroplastic5.0e-4064.15Show/hide
Query:  MSLTIPTNLSKPL-LKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQA-FSAALALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQ
        MS TIPTNL KPL  KPK  SS  S   P S I+C    +Q    +   + + A  +AALALSS+LLS    AP  A+ADIAGLTPCK+SKQFAKREKQ 
Subjt:  MSLTIPTNLSKPL-LKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQA-FSAALALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQ

Query:  IKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        +KKL++SLK YA DSAPALAI+A++EKTK+RF  YGK GLLCG+DGLPHLIVSGDQRHW
Subjt:  IKKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

P12356 Photosystem I reaction center subunit III, chloroplastic3.5e-2551.16Show/hide
Query:  KFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQ
        K SS +A  SR +  + C A +N+  S    + +  A +AA++     LSAP  A+ADIAGLTPC +SK +AK EK+++K LE  LK Y  DSAPA+A++
Subjt:  KFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSAPALAIQ

Query:  ASVEKTKRRFAFYGKQGLLCGADGLPHLI
        A++E+TK RFA Y K GLLCG DGLPHLI
Subjt:  ASVEKTKRRFAFYGKQGLLCGADGLPHLI

P13192 Photosystem I reaction center subunit III, chloroplastic2.3e-4065.31Show/hide
Query:  SSSLASK---SRPSS--SILCSATQNQNG---SPENASSSLQAFSAALALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYA
        S++ A+K   SRP +  S+ CSA+   N    +  + S+S++ FSAALALSS+LLS    +P PA ADIAGLTPCK+SK FAKREKQ +KKL SSLK YA
Subjt:  SSSLASK---SRPSS--SILCSATQNQNG---SPENASSSLQAFSAALALSSILLS----APLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYA

Query:  PDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        PDSAPALAIQA+++KTKRRF  YGK GLLCG+DGLPHLIVSGDQRHW
Subjt:  PDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

P46486 Photosystem I reaction center subunit III, chloroplastic5.8e-4466.46Show/hide
Query:  MSLTIPTNLSKPL-LKPKFSSSLASKSR-PSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSA---PLPAVADIAGLTPCKDSKQFAKREKQQI
        MS TI T+  +PL +    SS + SKS+  S+SI+CS + ++  +  +  SSL+A SAALALSSIL+S+    LPA ADI+GLTPCK+SKQFAKREKQ +
Subjt:  MSLTIPTNLSKPL-LKPKFSSSLASKSR-PSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSA---PLPAVADIAGLTPCKDSKQFAKREKQQI

Query:  KKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        KKLESSLK YAPDSAPALAI+A++EKTKRRF  YGKQGLLCG+DGLPHLIVSGDQRHW
Subjt:  KKLESSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

Q9SHE8 Photosystem I reaction center subunit III, chloroplastic4.3e-4768.18Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLE
        MSLTIP NL   +L P+ + SL  S  + S+  +CS  ++ + +P+    S++AFSAA+ALSSILLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLE
Subjt:  MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLE

Query:  SSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SSLK YAP+SAPALA+ A +EKTKRRF  YGK GLLCG+DGLPHLIV+GDQRHW
Subjt:  SSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW

Arabidopsis top hitse value%identityAlignment
AT1G31330.1 photosystem I subunit F3.0e-4868.18Show/hide
Query:  MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLE
        MSLTIP NL   +L P+ + SL  S  + S+  +CS  ++ + +P+    S++AFSAA+ALSSILLSAP+PAVADI+GLTPCKDSKQFAKREKQQIKKLE
Subjt:  MSLTIPTNLSKPLLKPKFSSSLA-SKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLE

Query:  SSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW
        SSLK YAP+SAPALA+ A +EKTKRRF  YGK GLLCG+DGLPHLIV+GDQRHW
Subjt:  SSLKNYAPDSAPALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCAC
CCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTTCCCGCTGTCGCCG
ACATCGCCGGGCTCACCCCCTGCAAGGATTCCAAGCAATTCGCCAAGAGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCC
CCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAG
TGGCGACCAGAGGCATTGGGAGATAGGGAAAGTGGAAGAGAGATTGACTTCTGGGATGGGGGTTGGTGAAATATGTGTATTTCAATTGGGAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTAACAATCCCCACAAACCTCTCAAAACCCCTTTTGAAGCCCAAATTCAGCTCCTCATTGGCCTCAAAATCAAGACCCTCTTCCTCAATCCTCTGTTCCGCCAC
CCAAAATCAAAATGGAAGTCCTGAAAATGCTTCCTCCTCTCTGCAGGCTTTCTCCGCCGCCTTAGCCCTCTCCTCCATCCTCCTCTCTGCCCCTCTTCCCGCTGTCGCCG
ACATCGCCGGGCTCACCCCCTGCAAGGATTCCAAGCAATTCGCCAAGAGAGAGAAGCAGCAAATCAAGAAATTGGAATCCTCTTTGAAGAATTACGCTCCCGACAGTGCC
CCGGCGCTGGCGATCCAAGCTTCGGTCGAGAAGACGAAGAGACGATTCGCTTTCTATGGAAAACAGGGGCTTCTTTGTGGGGCTGATGGGTTGCCTCATTTGATTGTGAG
TGGCGACCAGAGGCATTGGGAGATAGGGAAAGTGGAAGAGAGATTGACTTCTGGGATGGGGGTTGGTGAAATATGTGTATTTCAATTGGGAACTTGAGATGAGTTTATGC
AATGGTTGGTTGTATTTTGTTCACTACTTCCCCATTCTTTGCATTATGTGTACCCTAAATTTGTAAAGATCGTGACTTGGTGCGACTCGAACATTATGTGTTTATAGTTG
CAACGTTTCTCTTATTAGACGTCTTATTGATAAGTAGATGAGTAGTTTCTGCTTAAAGGATAGCGTTCTACTCTATAAACGTTTATAAATGAATCTTAATCGAGTGGTTC
ATTAGAGAATTATTGGTACTGGAGATATGAAATGTAATTATAGGGACAAAACAAACTTTTAAATGAATTGTAATTACGAACAACTCATAAAGAATCAACTTGCATGAAAT
GATTATTTCCATGGATATAACTTGCGGGACAAAATTAGGGAGGTCGAGGAGGCCACAGAGGCACGTAGTAGCCCACATCGGGCAGGTAAGTCTGACATTGTTTGGTCATC
TGGCAATCAATTTATTTTACTTTGAATTCGCACATTCCATCACAGAGGGATTTGTTGAGCAAACTCAGTTAGAGTTAGAGCTTCTTGAGTATATACTTA
Protein sequenceShow/hide protein sequence
MSLTIPTNLSKPLLKPKFSSSLASKSRPSSSILCSATQNQNGSPENASSSLQAFSAALALSSILLSAPLPAVADIAGLTPCKDSKQFAKREKQQIKKLESSLKNYAPDSA
PALAIQASVEKTKRRFAFYGKQGLLCGADGLPHLIVSGDQRHWEIGKVEERLTSGMGVGEICVFQLGT