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Carg25416 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25416
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSignal recognition particle subunit SRP68
Genome locationCarg_Chr11:4386965..4393473
RNA-Seq ExpressionCarg25416
SyntenyCarg25416
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0005047 - signal recognition particle binding (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
GO:0030942 - endoplasmic reticulum signal peptide binding (molecular function)
InterPro domainsIPR026258 - Signal recognition particle subunit SRP68
IPR038253 - SRP68, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588218.1 Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp. sororia]3.7e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
KAG7022116.1 Signal recognition particle subunit SRP68 [Cucurbita argyrosperma subsp. argyrosperma]7.9e-51100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA

Query:  CFP
        CFP
Subjt:  CFP
XP_022933752.1 signal recognition particle subunit SRP68-like isoform X1 [Cucurbita moschata]3.7e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
XP_022965811.1 signal recognition particle subunit SRP68-like isoform X1 [Cucurbita maxima]3.7e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
XP_023531772.1 signal recognition particle subunit SRP68-like isoform X2 [Cucurbita pepo subsp. pepo]3.7e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
TrEMBL top hitse value%identityAlignment
A0A0A0M2X1 Signal recognition particle subunit SRP682.6e-4797Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWD ALLNFKR+RAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSN+QASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
A0A6J1F0Q1 Signal recognition particle subunit SRP681.8e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
A0A6J1F5Q6 Signal recognition particle subunit SRP681.8e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
A0A6J1HMP5 Signal recognition particle subunit SRP681.8e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
A0A6J1HQ31 Signal recognition particle subunit SRP681.8e-48100Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
SwissProt top hitse value%identityAlignment
Q00004 Signal recognition particle subunit SRP689.2e-1035Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + IG  +   +EL+ +    G    L   KLEA++++ R++QA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Q8BMA6 Signal recognition particle subunit SRP681.2e-0935Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + IG  +   +EL+ +    G    L   KLEA++++ R++QA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Q9UHB9 Signal recognition particle subunit SRP689.2e-1035Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        ++G L FE  + W  A+  F + + +YE+L      E  VL  +RVEE+ P+IRYC + IG  +   +EL+ +    G    L   KLEA++++ R++QA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
Arabidopsis top hitse value%identityAlignment
AT5G61970.1 signal recognition particle-related / SRP-related6.4e-4383Show/hide
Query:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA
        M G LLFEQD+NW+  L  FK +RAVYEELGK GDLENQVLCRERVEELEPSIRYCLHKIGKSN+Q SELL IGEMEGPALDLFKAK+EA M EARSQQA
Subjt:  MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACTTCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGA
GAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGCTTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTG
GGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTCGGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGA
mRNA sequenceShow/hide mRNA sequence
CGCATGGCCGTGGAAAGTACACCAAACGAGCCATAACTCAATCAACTGTTACTGAAGTCAGGTTTCTCCATGTGGTTCTTTATACGGCGGAGAGAGCATGGAGTCATGCC
ATGGAGAAAAGGCAATTACCAGAGGTCCAAATGCACGTCAGCGTATCTATTTGATTGGTTAGGCTCAGAAAGGCAGTAAAATGGGCGGACTCTCTTCGCACAATTGTGTG
CAAGCAAGGGAGACTCAAGAACATCTTGGAAGCAGAGGCTTATGCATCTTATATGACTGGGAACTTGTTGTTTGAACAAGATCGGAATTGGGACATAGCATTATTGAACT
TCAAAAGATCTAGAGCTGTTTATGAGGAACTTGGGAAAGTAGGAGATCTAGAGAATCAAGTTTTGTGCCGTGAACGTGTGGAGGAGCTAGAACCTAGTATAAGATATTGC
TTGCACAAGATTGGCAAGTCAAATATCCAGGCCTCTGAACTTCTACATATTGGGGAGATGGAAGGCCCTGCTCTAGACCTTTTCAAAGCTAAACTAGAGGCTGTCATGTC
GGAGGCCAGATCTCAGCAGGCCTGTTTCCCATGACGGAGTTTCATTGCTTGGTCATAGGTTTCCAATATCAATGCTAAACAACTAGAGTTTCCATATTGAAAGCTCGGGA
AGTTACGAAAAGGATTTGCAAGATCAGCAGATTCACTTCCAGACCAGAAAAAGACTGACGCCATTTTTGATAAAGAATCTTTACAGCATACCATGAGGCAAGGAGCTCAT
TCGCATGATCTGGTCAGCCGCTGGAAATGCTGAAAAAATGTCAAAGATGATTTAAGTGGGCTTGATAAAGTGTTAGTTGCAGTGTGGCCAAAGGACAATTGAACGCAACC
CAGTTATTGTGAAAATCGCAACAAGTAAGCTTGTTAGGGCCGCCACGATGAAAAAAATGAGAAAGTTAACCAAGCCGGAGGAAACTTGTTCCGCTTGTATGATCTCTTAT
TGCCGAATCTTGCTGAACCTTTCTGATTTAGCAGTTCGGAATAAGAGATAGGAAGCCAGGAAGAAGTGACATTTGCTTGAAGGTGCTCACTGTAAAAGTAATAGCTTTTC
GTGGAAAAGCGTGCTTTTACTTCGGCAAAATCATTACCAGTCTGGCTGAAAAAAGAGGCTGAAGCTCCATGTACTTTACTCGCCATGCTCGCCTCCTTGTCGAAGATGCC
ATACAAAAACTGTCCGTTCGGAAAATAATCAGTGAACCCGGAAGATTATCGGAAGAGTTGAAGACTATTGATTGAGGAAGCAGACAGTTGTATTGAGCATGCAATCTGAA
TCATGGAGGAGATTAAGCGACTCCGAGCATCTATGCGAACAAGATCCATCAGAAACATGTCATTAACGGATGGCATGGTAGAGAAGAAATGTGCTAAGCGGTCAAATACC
TCGCTAGAGCCTCCGACAACTATGCAAGTCTTGTGATCGCCAGATTCGAATACCACAGAGTGCTTCCACGCATTGAAGCCCTTATCCCTCCCGCCTTTCAGGCGGATCCC
CCGGAATCACCATTTGCTTCTGGACCCTTGCTGTTAGACTTCCACCTTCGATTCCCAGATCTGCTCTGAGAAATGAGATGAAAAAAGGACAGAAAGGGCTTATATCAGTG
AGGTGCTATGGGGATGAGCTTCTTCGTGCACAGGTTTGGTTTTCTTTGCTGCCTGGTTTTTGTTTTGCTGGTGGATACATGAATATAGATACAGAACTTGGTACTGATCC
TTTAACAACTTCCCAGCCCCCCTTGTGAATTCTGGGTCACGGTTGGAAACTAATGACTGTTTGTTTCTTGGTTTCTCTCGGATGTGTAGCAAAGATATAGGATCAATTTT
CAGGATTTTTGTTAGAGCCTGCTTGTGACTGTTGCAGATTACACATTGTTTAGTATCTGATTTTTGCTAATAATTTTGAGTTCATTGTGGATATTTTAGGCGTTGATTCG
AAAATTCTGTCACGATACAGTTATTTACCACACCTATGAGGATATGATTAAATTGATATGGCTATGATAAGCTACCATTACAAACACCTTGTCTCGCTAATCAGCTGGCA
GTCCCCATGCCCTGCCATAAAAAA
Protein sequenceShow/hide protein sequence
MTGNLLFEQDRNWDIALLNFKRSRAVYEELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNIQASELLHIGEMEGPALDLFKAKLEAVMSEARSQQACFP