; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg25421 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25421
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Genome locationCarg_Chr11:4359833..4365259
RNA-Seq ExpressionCarg25421
SyntenyCarg25421
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011993 - PH-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588213.1 PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-36100Show/hide
Query:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

KAG7022112.1 hypothetical protein SDJN02_15841, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-64100Show/hide
Query:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNN
        MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNN
Subjt:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNN

Query:  YYWEYRIQNCYHLRIFPMISLMVH
        YYWEYRIQNCYHLRIFPMISLMVH
Subjt:  YYWEYRIQNCYHLRIFPMISLMVH

XP_022931972.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata]1.5e-3598.73Show/hide
Query:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        MD MAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

XP_022973773.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima]1.7e-36100Show/hide
Query:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

XP_023530885.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo]1.7e-36100Show/hide
Query:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

TrEMBL top hitse value%identityAlignment
A0A0B0MKP3 Putative E3 ubiquitin-protein ligase HERC17.9e-3589.53Show/hide
Query:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ
        M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT   Q
Subjt:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ

A0A1Q3B2B4 RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-containing protein/Mcp5_PH domain-containing protein/BRX_N domain-containing protein1.6e-3590.7Show/hide
Query:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ
        M RMDRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT   Q
Subjt:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ

A0A5J5UDJ3 Uncharacterized protein7.9e-3589.53Show/hide
Query:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ
        M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT   Q
Subjt:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ

A0A6J1EVB8 PH, RCC1 and FYVE domains-containing protein 1-like7.1e-3698.73Show/hide
Query:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        MD MAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

A0A6J1IE52 PH, RCC1 and FYVE domains-containing protein 1-like8.4e-37100Show/hide
Query:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

SwissProt top hitse value%identityAlignment
Q947D2 PH, RCC1 and FYVE domains-containing protein 11.1e-1755.84Show/hide
Query:  DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ
        DL      + ++EQA+  LKKG  LLKYGR+GKPKF PFR+S+DE  LIW S   EK LKL+ VS+I+ GQRT   Q
Subjt:  DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ

Arabidopsis top hitse value%identityAlignment
AT1G69710.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain6.0e-2772.6Show/hide
Query:  DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        D  RT   ERDVEQAIT+LKKG+YLLKYGRRGKPKFCPF++++DES L+W+SGKEEK +KLS V RI+ GQRT
Subjt:  DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

AT3G47660.1 Regulator of chromosome condensation (RCC1) family protein9.9e-2255.56Show/hide
Query:  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRI
        +R+ EQAI  LKKGAYLLKYGRRGKPKF PFR+S+DE  L+W+ GK+EK LKLS V+RII GQRT        +   YP     Y  + +
Subjt:  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRI

AT5G12350.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.7e-3582.56Show/hide
Query:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ
        M R  RMA DLSR G  ERD+EQAI ALKKGAYLLKYGRRGKPKFCPFR+SNDE+VLIWFSG EEKHLKLSHVSRIISGQRT   Q
Subjt:  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ

AT5G19420.1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain2.3e-3482.76Show/hide
Query:  MDRMDRMA-QDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ
        M R  RM   DLSR G   RD+EQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT   Q
Subjt:  MDRMDRMA-QDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ

AT5G19420.2 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain1.3e-2965.38Show/hide
Query:  DLSRTGAGERDVEQ---------------------------AITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
        DLSR G   RD+EQ                           AITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT
Subjt:  DLSRTGAGERDVEQ---------------------------AITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRT

Query:  VSLQ
           Q
Subjt:  VSLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTA
TGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCT
CTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGT
TATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTA
TGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCT
CTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGT
TATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG
Protein sequenceShow/hide protein sequence
MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRIQNC
YHLRIFPMISLMVH