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Carg25443 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25443
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein family protein
Genome locationCarg_Chr13:6641960..6642298
RNA-Seq ExpressionCarg25443
SyntenyCarg25443
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]1.6e-5294.64Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]9.8e-5599.11Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023001494.1 uncharacterized protein LOC111495614 [Cucurbita maxima]8.3e-5497.32Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]2.6e-55100Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]3.8e-5192.86Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GSMVQ GSNVESNP+SLDRVGKVR+LLFRRMLIGIKDGRFFLGSFYC+DKQGNIILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDE+LALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein7.6e-5394.64Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A1S3BAH4 uncharacterized protein LOC1034877845.4e-5192.86Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 25.4e-5192.86Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341494.7e-5599.11Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956144.0e-5497.32Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNIILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit2.5e-0539.73Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL ++P    VS  V+
Subjt:  KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

P63162 Small nuclear ribonucleoprotein-associated protein N3.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q17QN3 Small nuclear ribonucleoprotein-associated protein N3.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B3.9e-0632.95Show/hide
Query:  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q60HD3 Small nuclear ribonucleoprotein-associated protein N3.3e-0538.27Show/hide
Query:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD
        VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   E+R LGL+L+     VS  V+
Subjt:  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein2.0e-3766.07Show/hide
Query:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +  S   V S  E +    D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNIILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV

AT4G20440.2 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD

AT4G20440.3 small nuclear ribonucleoprotein associated protein B1.7e-0427.38Show/hide
Query:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD
        S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ +    ++R LGL+L+     +S  V+
Subjt:  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSPSPMEQRCLGLILIPNSCRVSCHVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTA
GCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTA
TCTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTA
GCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTA
TCTGTTTAG
Protein sequenceShow/hide protein sequence
MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV