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Carg25469 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25469
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncation-chloride cotransporter 1
Genome locationCarg_Chr13:6464500..6465430
RNA-Seq ExpressionCarg25469
SyntenyCarg25469
Gene Ontology termsGO:0006884 - cell volume homeostasis (biological process)
GO:0055064 - chloride ion homeostasis (biological process)
GO:0055075 - potassium ion homeostasis (biological process)
GO:1902476 - chloride transmembrane transport (biological process)
GO:1990573 - potassium ion import across plasma membrane (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008511 - sodium:potassium:chloride symporter activity (molecular function)
InterPro domainsIPR004842 - SLC12A transporter family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583858.1 Cation-chloride cotransporter 1, partial [Cucurbita argyrosperma subsp. sororia]6.5e-63100Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

KAG7019480.1 Cation-chloride cotransporter 1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-63100Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

XP_022927331.1 cation-chloride cotransporter 1-like isoform X1 [Cucurbita moschata]1.9e-6299.21Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNG+IESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

XP_023001386.1 cation-chloride cotransporter 1-like isoform X1 [Cucurbita maxima]1.9e-6299.21Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTE DGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

XP_023519568.1 LOW QUALITY PROTEIN: cation-chloride cotransporter 1-like [Cucurbita pepo subsp. pepo]1.9e-6299.21Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTE DGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

TrEMBL top hitse value%identityAlignment
A0A0A0M162 Uncharacterized protein7.5e-5790Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPI---SLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNIL
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPG+SSSSSSVPPI   SLK VKV SQTGTE +GNSPTRI+V+GPQRESKLEFFGFDSLVNIL
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPI---SLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNIL

Query:  GLKSMMGEQIQAPTSPRDGENISITQGLPK
        GLKSMMGEQIQAP+SPRDGEN+S+TQGLPK
Subjt:  GLKSMMGEQIQAPTSPRDGENISITQGLPK

A0A1S3BBY4 cation-chloride cotransporter 1 isoform X11.5e-5790.77Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPI---SLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNIL
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPG+SSSSSS+PPI   SLK VKV SQTGTE DGNSPTRIEV+GPQRESKLEFFGFDSLVNIL
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPI---SLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNIL

Query:  GLKSMMGEQIQAPTSPRDGENISITQGLPK
        GLKSMMGEQIQAP+SPRDGEN+S+TQGLPK
Subjt:  GLKSMMGEQIQAPTSPRDGENISITQGLPK

A0A5D3C0U6 Cation-chloride cotransporter 1 isoform X11.5e-5790.77Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPI---SLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNIL
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPG+SSSSSS+PPI   SLK VKV SQTGTE DGNSPTRIEV+GPQRESKLEFFGFDSLVNIL
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPI---SLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNIL

Query:  GLKSMMGEQIQAPTSPRDGENISITQGLPK
        GLKSMMGEQIQAP+SPRDGEN+S+TQGLPK
Subjt:  GLKSMMGEQIQAPTSPRDGENISITQGLPK

A0A6J1EHD5 cation-chloride cotransporter 1-like isoform X19.1e-6399.21Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNG+IESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

A0A6J1KIG9 cation-chloride cotransporter 1-like isoform X19.1e-6399.21Show/hide
Query:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
        MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTE DGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK
Subjt:  MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLK

Query:  SMMGEQIQAPTSPRDGENISITQGLPK
        SMMGEQIQAPTSPRDGENISITQGLPK
Subjt:  SMMGEQIQAPTSPRDGENISITQGLPK

SwissProt top hitse value%identityAlignment
Q2UVJ5 Cation-chloride cotransporter 12.8e-3264.18Show/hide
Query:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL
        MD+GDIE    +GEEEF  G R  G KYRPV AHDRAV+EMSS+DPG+SSS       +LKN+KV +     A    P    V+G Q+ESKLE FGFDSL
Subjt:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL

Query:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK
        VNILGLKSM GEQIQAP+SPRDGE+ISITQG PK
Subjt:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK

Q657W3 Cation-chloride cotransporter 21.1e-1747.79Show/hide
Query:  RKYRPVEAHDRAVLEMSSMDPGASS-SSSSVPPISLK---NVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLKSMMGEQIQAPTSPR
        ++YR VE+HDRAV++M+ M+ G+S+ +S+S  P  +K   N++ D++    +     +    +G Q +SKLE FGFDSLVNILGLK M+GEQ QA  S R
Subjt:  RKYRPVEAHDRAVLEMSSMDPGASS-SSSSVPPISLK---NVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLKSMMGEQIQAPTSPR

Query:  DGENISITQGLPK
        DGEN  I  G PK
Subjt:  DGENISITQGLPK

Q6Z0E2 Cation-chloride cotransporter 12.3e-2348.53Show/hide
Query:  MDNGDIESGEEEF----HGQRGRKYRPVEAHDRAVLEMSSMDPGASSSS-----SSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFD
        M+NG+IE   ++         GR+YRPV + DRAV++M+SM+PG+SSS+     S + P   +N+ VD     +   +          Q +SKLE FGFD
Subjt:  MDNGDIESGEEEF----HGQRGRKYRPVEAHDRAVLEMSSMDPGASSSS-----SSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFD

Query:  SLVNILGLKSMMGEQIQAPTSPRDGENISITQGLPK
        SLVNILGLKSM GEQIQAP+SPRDGE+++IT G PK
Subjt:  SLVNILGLKSMMGEQIQAPTSPRDGENISITQGLPK

Arabidopsis top hitse value%identityAlignment
AT1G30450.1 cation-chloride co-transporter 12.0e-3364.18Show/hide
Query:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL
        MD+GDIE    +GEEEF  G R  G KYRPV AHDRAV+EMSS+DPG+SSS       +LKN+KV +     A    P    V+G Q+ESKLE FGFDSL
Subjt:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL

Query:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK
        VNILGLKSM GEQIQAP+SPRDGE+ISITQG PK
Subjt:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK

AT1G30450.2 cation-chloride co-transporter 12.0e-3364.18Show/hide
Query:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL
        MD+GDIE    +GEEEF  G R  G KYRPV AHDRAV+EMSS+DPG+SSS       +LKN+KV +     A    P    V+G Q+ESKLE FGFDSL
Subjt:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL

Query:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK
        VNILGLKSM GEQIQAP+SPRDGE+ISITQG PK
Subjt:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK

AT1G30450.3 cation-chloride co-transporter 12.0e-3364.18Show/hide
Query:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL
        MD+GDIE    +GEEEF  G R  G KYRPV AHDRAV+EMSS+DPG+SSS       +LKN+KV +     A    P    V+G Q+ESKLE FGFDSL
Subjt:  MDNGDIE----SGEEEFH-GQR--GRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSL

Query:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK
        VNILGLKSM GEQIQAP+SPRDGE+ISITQG PK
Subjt:  VNILGLKSMMGEQIQAPTSPRDGENISITQGLPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATGGTGATATTGAGAGCGGGGAAGAGGAGTTTCATGGGCAGAGGGGAAGGAAGTACCGACCTGTGGAAGCTCATGATCGTGCTGTTCTTGAAATGTCTTCTAT
GGATCCGGGGGCATCATCTTCTTCGTCCTCCGTTCCCCCCATTTCTCTGAAGAATGTAAAAGTGGATTCTCAGACGGGCACTGAAGCAGATGGGAATTCTCCTACTCGTA
TTGAAGTTGATGGCCCCCAGCGAGAATCCAAGCTGGAGTTTTTTGGTTTTGATTCTCTTGTCAATATTCTTGGCCTTAAGAGTATGATGGGGGAACAAATTCAAGCACCT
ACTAGTCCTCGAGATGGTGAGAATATTTCTATCACTCAAGGATTGCCAAAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAATGGTGATATTGAGAGCGGGGAAGAGGAGTTTCATGGGCAGAGGGGAAGGAAGTACCGACCTGTGGAAGCTCATGATCGTGCTGTTCTTGAAATGTCTTCTAT
GGATCCGGGGGCATCATCTTCTTCGTCCTCCGTTCCCCCCATTTCTCTGAAGAATGTAAAAGTGGATTCTCAGACGGGCACTGAAGCAGATGGGAATTCTCCTACTCGTA
TTGAAGTTGATGGCCCCCAGCGAGAATCCAAGCTGGAGTTTTTTGGTTTTGATTCTCTTGTCAATATTCTTGGCCTTAAGAGTATGATGGGGGAACAAATTCAAGCACCT
ACTAGTCCTCGAGATGGTGAGAATATTTCTATCACTCAAGGATTGCCAAAG
Protein sequenceShow/hide protein sequence
MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGASSSSSSVPPISLKNVKVDSQTGTEADGNSPTRIEVDGPQRESKLEFFGFDSLVNILGLKSMMGEQIQAP
TSPRDGENISITQGLPK