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Carg25519 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25519
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 13-like
Genome locationCarg_Chr10:5830642..5830821
RNA-Seq ExpressionCarg25519
SyntenyCarg25519
Gene Ontology termsGO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022018.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-1283.05Show/hide
Query:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL
        M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDA LSLPTLMASLAPL L FFL
Subjt:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL

KAG7023913.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-17100Show/hide
Query:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL
        MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL
Subjt:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL

XP_011660059.1 arabinogalactan protein 13 [Cucumis sativus]8.9e-0767.8Show/hide
Query:  AMKFQALMLAMVVG---AMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF
        A +FQ LM+ M+V    A++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL  GFF
Subjt:  AMKFQALMLAMVVG---AMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF

XP_022988237.1 arabinogalactan peptide 13-like [Cucurbita maxima]4.3e-1798.31Show/hide
Query:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL
        MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDA LSLPTLMASLAPLALGFFL
Subjt:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL

XP_038879727.1 arabinogalactan protein 13-like [Benincasa hispida]2.5e-0980.33Show/hide
Query:  MEAMKFQAL-MLAMVVGAMAL-SSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL
        MEAMK QAL M+ MVV  MA  SS+IVAAQEAPAPSPASDA +SLPTLMASLAPL LGFFL
Subjt:  MEAMKFQAL-MLAMVVGAMAL-SSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL

TrEMBL top hitse value%identityAlignment
A0A0A0LWU9 Uncharacterized protein4.3e-0767.8Show/hide
Query:  AMKFQALMLAMVVG---AMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF
        A +FQ LM+ M+V    A++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL  GFF
Subjt:  AMKFQALMLAMVVG---AMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF

A0A6J1JCI6 arabinogalactan peptide 13-like2.1e-1798.31Show/hide
Query:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL
        MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDA LSLPTLMASLAPLALGFFL
Subjt:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL

SwissProt top hitse value%identityAlignment
Q9C8A4 Arabinogalactan protein 213.3e-0452.63Show/hide
Query:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGF
        MEAMK + ++  MVV A+A S+   A  EAPAPSP SDA++ +P L AS+  LA GF
Subjt:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGF

Q9STQ3 Arabinogalactan protein 135.1e-0558.62Show/hide
Query:  MEAMKFQALMLAMVVGAMALSST-IVAAQEAPAPSPASDASLSLPTLMASLAPLALGF
        MEAMK + L +A++V AMA S+    AA EAPAPSP SDASL++P   AS+A LA GF
Subjt:  MEAMKFQALMLAMVVGAMALSST-IVAAQEAPAPSPASDASLSLPTLMASLAPLALGF

Arabidopsis top hitse value%identityAlignment
AT1G55330.1 arabinogalactan protein 212.3e-0552.63Show/hide
Query:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGF
        MEAMK + ++  MVV A+A S+   A  EAPAPSP SDA++ +P L AS+  LA GF
Subjt:  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGF

AT3G13520.1 arabinogalactan protein 123.4e-0446.55Show/hide
Query:  MEAMKFQALMLAMV-VGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGF
        ME+MK + +++ MV + A +    + A  EAPAPSP SDA++ +P L AS+A LA GF
Subjt:  MEAMKFQALMLAMV-VGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGF

AT4G26320.1 arabinogalactan protein 133.6e-0658.62Show/hide
Query:  MEAMKFQALMLAMVVGAMALSST-IVAAQEAPAPSPASDASLSLPTLMASLAPLALGF
        MEAMK + L +A++V AMA S+    AA EAPAPSP SDASL++P   AS+A LA GF
Subjt:  MEAMKFQALMLAMVVGAMALSST-IVAAQEAPAPSPASDASLSLPTLMASLAPLALGF

AT5G56540.1 arabinogalactan protein 141.2e-0451.67Show/hide
Query:  MEAMKFQALMLAMVVGAMALSST--IVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF
        MEAMK + L + ++V  +A S+    VAA +APAPSP SDAS  +PT  AS+A +A GFF
Subjt:  MEAMKFQALMLAMVVGAMALSST--IVAAQEAPAPSPASDASLSLPTLMASLAPLALGFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCATGAAGTTTCAAGCTTTGATGTTGGCCATGGTGGTGGGAGCTATGGCGTTGTCATCCACCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTC
GGATGCTTCTCTTTCTCTTCCCACTTTAATGGCTTCTCTTGCTCCTCTTGCTCTTGGATTCTTCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCATGAAGTTTCAAGCTTTGATGTTGGCCATGGTGGTGGGAGCTATGGCGTTGTCATCCACCATTGTTGCAGCTCAAGAAGCTCCAGCTCCAAGCCCTGCTTC
GGATGCTTCTCTTTCTCTTCCCACTTTAATGGCTTCTCTTGCTCCTCTTGCTCTTGGATTCTTCCTCTAA
Protein sequenceShow/hide protein sequence
MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL