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Carg25525 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25525
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description4F5 domain-containing protein
Genome locationCarg_Chr17:9039448..9040124
RNA-Seq ExpressionCarg25525
SyntenyCarg25525
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007513 - Uncharacterised protein family SERF, N-terminal
IPR040211 - Small EDRK-rich factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575984.1 hypothetical protein SDJN03_26623, partial [Cucurbita argyrosperma subsp. sororia]4.5e-27100Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDG
        MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDG
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDG

KAG7014508.1 hypothetical protein SDJN02_24686, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-29100Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
        MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

XP_022953785.1 putative SERF-like protein [Cucurbita moschata]4.1e-2897.37Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
        MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERD+KALQEKTARKAAMAAGGINAG GGKIK
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

XP_022991972.1 putative SERF-like protein [Cucurbita maxima]2.0e-2796.05Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
        MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDG TPEQRRERD+KALQEKTARKAAMAAGGINAG GGKIK
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

XP_023547529.1 putative SERF-like protein [Cucurbita pepo subsp. pepo]2.0e-2796.05Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
        MIDDFRQR SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERD+KALQEKTARKAAMAAGGINAG GGKIK
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

TrEMBL top hitse value%identityAlignment
A0A0R0G092 4F5 domain-containing protein3.1e-1887.3Show/hide
Query:  RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK
        RGNQR+RDRERAQARAG KTKQP+NDGLTPEQRRERD+KALQEKTA+KAA AAGG NAG GGK
Subjt:  RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK

A0A445GGC4 4F5 domain-containing protein (Fragment)8.3e-1986.15Show/hide
Query:  SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK
        S+RGNQR+RDRERAQARAG KTKQP+NDGLTPEQRRERD+KALQEKTA+KAA AAGG NAG GGK
Subjt:  SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK

A0A6J1GQM6 putative SERF-like protein2.0e-2897.37Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
        MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERD+KALQEKTARKAAMAAGGINAG GGKIK
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

A0A6J1JNE6 putative SERF-like protein9.7e-2896.05Show/hide
Query:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
        MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDG TPEQRRERD+KALQEKTARKAAMAAGGINAG GGKIK
Subjt:  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

K7MG85 4F5 domain-containing protein8.3e-1986.15Show/hide
Query:  SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK
        S+RGNQR+RDRERAQARAG KTKQP+NDGLTPEQRRERD+KALQEKTA+KAA AAGG NAG GGK
Subjt:  SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24100.1 Uncharacterised protein family SERF2.3e-1369.35Show/hide
Query:  RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGG
        RG+QR+RDRERA AR G K K  ++DGLTPEQRRERD+KALQEKTA+KAA AA   ++G GG
Subjt:  RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGG

AT4G13615.1 Uncharacterised protein family SERF1.9e-1269.35Show/hide
Query:  RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGG
        RG+QR+RDRERA ARAG K K   +DGLTPEQRRERD KALQEK A+KAA AAG  + G  G
Subjt:  RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGA
CGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTA
AAATTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGA
CGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTA
AAATTAAGTAACTGCAGATTCGATTTGGAGTAAATAGGAGAAGATTTATGGTAAAATCCATCCATCATGTGGATTCCTTTGCATTAGAACAAAGTTTGACTCTGCTTTTG
AATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGAAAATGATGTCAATTTCTTGC
Protein sequenceShow/hide protein sequence
MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK