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Carg25535 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25535
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr17:8980105..8980849
RNA-Seq ExpressionCarg25535
SyntenyCarg25535
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575974.1 3-methyl-2-oxobutanoate hydroxymethyltransferase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]8.1e-46100Show/hide
Query:  MVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR
        MVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR
Subjt:  MVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR

KAG7014499.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-73100Show/hide
Query:  MMRAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTL
        MMRAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTL
Subjt:  MMRAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTL

Query:  ICGLARAGRLDDASFIISKLKEVFSVFRTYALEAIMPRVEPKE
        ICGLARAGRLDDASFIISKLKEVFSVFRTYALEAIMPRVEPKE
Subjt:  ICGLARAGRLDDASFIISKLKEVFSVFRTYALEAIMPRVEPKE

XP_022147524.1 pentatricopeptide repeat-containing protein At5g28460 [Momordica charantia]2.9e-4376.67Show/hide
Query:  RAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLIC
        +AHEL N++ NE V     PNVIT+NTLVDGMCK GRIS+AVEF REMQQKGLKGNSVTYTV INAFCK ++IDKAM+F DEM KAG +PD+IVYYTLIC
Subjt:  RAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLIC

Query:  GLARAGRLDDASFIISKLKE
        GLA+AGRLDDASF++SKLKE
Subjt:  GLARAGRLDDASFIISKLKE

XP_022953646.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita moschata]8.1e-5494.07Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E  +ELLNEMVREHLAPNVITINTLVDGMCK GRISTA+EFFREMQQKGLKGNSVTYTV INAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKEV
        RAGRLDDASFI SKLKEV
Subjt:  RAGRLDDASFIISKLKEV

XP_023514674.1 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucurbita pepo subsp. pepo]2.4e-4276.27Show/hide
Query:  AHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICG
        A E  + L NEMV E + PNVIT+NTLVDGMCK GRIS+AVEFFREMQQKGLKGNSVTYTV INAFCKV++IDKA++F DEMSKAG +PDAIVYYTLICG
Subjt:  AHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICG

Query:  LARAGRLDDASFIISKLK
        LA+AGRLDDA+ + S++K
Subjt:  LARAGRLDDASFIISKLK

TrEMBL top hitse value%identityAlignment
A0A1S3BGI7 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like1.5e-4274.36Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E+ N+L +EMV E + PNVIT+NTLVDGMCK  RISTAV+FFR+MQQKGLKGN+VTYTV INAFC V++++KAM+FLDEMSK G +PDA+VYYTLICGLA
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        RAGRLDD+S ++SKLKE
Subjt:  RAGRLDDASFIISKLKE

A0A5D3DT18 Pentatricopeptide repeat-containing protein1.5e-4274.36Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E+ N+L +EMV E + PNVIT+NTLVDGMCK  RISTAV+FFR+MQQKGLKGN+VTYTV INAFC V++++KAM+FLDEMSK G +PDA+VYYTLICGLA
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        RAGRLDD+S ++SKLKE
Subjt:  RAGRLDDASFIISKLKE

A0A6J1D191 pentatricopeptide repeat-containing protein At5g284601.4e-4376.67Show/hide
Query:  RAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLIC
        +AHEL N++ NE V     PNVIT+NTLVDGMCK GRIS+AVEF REMQQKGLKGNSVTYTV INAFCK ++IDKAM+F DEM KAG +PD+IVYYTLIC
Subjt:  RAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLIC

Query:  GLARAGRLDDASFIISKLKE
        GLA+AGRLDDASF++SKLKE
Subjt:  GLARAGRLDDASFIISKLKE

A0A6J1GNK8 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like3.9e-5494.07Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E  +ELLNEMVREHLAPNVITINTLVDGMCK GRISTA+EFFREMQQKGLKGNSVTYTV INAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKEV
        RAGRLDDASFI SKLKEV
Subjt:  RAGRLDDASFIISKLKEV

A0A6J1H7V3 pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like1.3e-4174.58Show/hide
Query:  AHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICG
        A E  + L +EMV E + PNVIT+NTLVDGMCK GRIS+AVEFFREMQQKGLKGNSVTYTV INAFCKV++IDKA++F DEMSKAG +PDAIVYYTLICG
Subjt:  AHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICG

Query:  LARAGRLDDASFIISKLK
        LA+AGRLDDA+ +  ++K
Subjt:  LARAGRLDDASFIISKLK

SwissProt top hitse value%identityAlignment
Q9LKU8 Pentatricopeptide repeat-containing protein At5g284601.0e-2243.59Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E   E+++ M  + + PNV+T+NT+V GMC+   ++ AV FF +M+++G+KGN VTY   I+A C V +++KAM + ++M +AG  PDA +YY LI GL 
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        +  R  DA  ++ KLKE
Subjt:  RAGRLDDASFIISKLKE

Q9LQ15 Pentatricopeptide repeat-containing protein At1g62914, mitochondrial2.0e-1839.29Show/hide
Query:  ELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR
        ++L  M+R+   PNV+T NTL++G CK  R+   +E FREM Q+GL GN+VTYT  I+ F +  D D A     +M   G +P+ + Y  L+ GL + G+
Subjt:  ELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR

Query:  LDDASFIISKLK
        L  A  +   L+
Subjt:  LDDASFIISKLK

Q9M316 Pentatricopeptide repeat-containing protein At3g61520, mitochondrial1.0e-2243.59Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E   E+++ M  + + PNV+T+NT+V GMC+   ++ AV FF +M+++G+KGN VTY   I+A C V +++KAM + ++M +AG  PDA +YY LI GL 
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        +  R  DA  ++ KLKE
Subjt:  RAGRLDDASFIISKLKE

Q9SH26 Pentatricopeptide repeat-containing protein At1g634001.5e-1840Show/hide
Query:  HELLNE---LLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLI
        H+ L+E   +   M+ +   PNV+T NTL++G CK  RI   VE FREM Q+GL GN+VTYT  I+ F +  D D A     +M   G +P+ + Y TL+
Subjt:  HELLNE---LLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLI

Query:  CGLARAGRLDDASFIISKLK
         GL + G+L+ A  +   L+
Subjt:  CGLARAGRLDDASFIISKLK

Q9SXD1 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial2.2e-1738.33Show/hide
Query:  HELLNE---LLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLI
        H+ L+E   +   MV +H  P+V+T NTL+ G CK  R+   +E FREM Q+GL GN+VTY + I    +  D D A +   EM   G  P+ + Y TL+
Subjt:  HELLNE---LLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLI

Query:  CGLARAGRLDDASFIISKLK
         GL + G+L+ A  +   L+
Subjt:  CGLARAGRLDDASFIISKLK

Arabidopsis top hitse value%identityAlignment
AT1G62914.1 pentatricopeptide (PPR) repeat-containing protein1.4e-1939.29Show/hide
Query:  ELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR
        ++L  M+R+   PNV+T NTL++G CK  R+   +E FREM Q+GL GN+VTYT  I+ F +  D D A     +M   G +P+ + Y  L+ GL + G+
Subjt:  ELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGR

Query:  LDDASFIISKLK
        L  A  +   L+
Subjt:  LDDASFIISKLK

AT1G63400.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-1940Show/hide
Query:  HELLNE---LLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLI
        H+ L+E   +   M+ +   PNV+T NTL++G CK  RI   VE FREM Q+GL GN+VTYT  I+ F +  D D A     +M   G +P+ + Y TL+
Subjt:  HELLNE---LLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLI

Query:  CGLARAGRLDDASFIISKLK
         GL + G+L+ A  +   L+
Subjt:  CGLARAGRLDDASFIISKLK

AT3G61520.1 Pentatricopeptide repeat (PPR) superfamily protein7.1e-2443.59Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E   E+++ M  + + PNV+T+NT+V GMC+   ++ AV FF +M+++G+KGN VTY   I+A C V +++KAM + ++M +AG  PDA +YY LI GL 
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        +  R  DA  ++ KLKE
Subjt:  RAGRLDDASFIISKLKE

AT5G28370.1 Pentatricopeptide repeat (PPR) superfamily protein7.1e-2443.59Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E   E+++ M  + + PNV+T+NT+V GMC+   ++ AV FF +M+++G+KGN VTY   I+A C V +++KAM + ++M +AG  PDA +YY LI GL 
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        +  R  DA  ++ KLKE
Subjt:  RAGRLDDASFIISKLKE

AT5G28460.1 Pentatricopeptide repeat (PPR) superfamily protein7.1e-2443.59Show/hide
Query:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA
        E   E+++ M  + + PNV+T+NT+V GMC+   ++ AV FF +M+++G+KGN VTY   I+A C V +++KAM + ++M +AG  PDA +YY LI GL 
Subjt:  ELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLA

Query:  RAGRLDDASFIISKLKE
        +  R  DA  ++ KLKE
Subjt:  RAGRLDDASFIISKLKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGAGCCCATGAGCTCTTGAATGAGCTCTTGAATGAGATGGTCAGGGAACACCTTGCACCTAATGTAATCACCATAAATACTTTAGTCGATGGAATGTGCAAGCT
TGGTAGAATAAGCACTGCAGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAACTCTGTTACTTACACGGTGTCCATTAATGCGTTTTGCAAAGTCGACG
ATATCGATAAGGCGATGAAATTTTTGGATGAAATGTCCAAAGCTGGACGTTATCCTGATGCCATTGTCTATTATACTTTGATATGTGGCTTAGCCCGAGCTGGAAGGTTG
GATGATGCAAGCTTTATTATATCGAAGTTGAAAGAGGTTTTCTCCGTTTTTCGGACCTATGCTCTAGAAGCTATTATGCCTCGGGTTGAACCAAAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAGAGCCCATGAGCTCTTGAATGAGCTCTTGAATGAGATGGTCAGGGAACACCTTGCACCTAATGTAATCACCATAAATACTTTAGTCGATGGAATGTGCAAGCT
TGGTAGAATAAGCACTGCAGTTGAGTTCTTCAGGGAAATGCAGCAGAAGGGCTTGAAAGGAAACTCTGTTACTTACACGGTGTCCATTAATGCGTTTTGCAAAGTCGACG
ATATCGATAAGGCGATGAAATTTTTGGATGAAATGTCCAAAGCTGGACGTTATCCTGATGCCATTGTCTATTATACTTTGATATGTGGCTTAGCCCGAGCTGGAAGGTTG
GATGATGCAAGCTTTATTATATCGAAGTTGAAAGAGGTTTTCTCCGTTTTTCGGACCTATGCTCTAGAAGCTATTATGCCTCGGGTTGAACCAAAAGAATAA
Protein sequenceShow/hide protein sequence
MMRAHELLNELLNEMVREHLAPNVITINTLVDGMCKLGRISTAVEFFREMQQKGLKGNSVTYTVSINAFCKVDDIDKAMKFLDEMSKAGRYPDAIVYYTLICGLARAGRL
DDASFIISKLKEVFSVFRTYALEAIMPRVEPKE