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Carg25544 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25544
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionthioredoxin-like protein 4B
Genome locationCarg_Chr17:8953363..8956094
RNA-Seq ExpressionCarg25544
SyntenyCarg25544
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]2.2e-78100Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]1.6e-7697.35Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]8.5e-7899.34Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]3.8e-7899.34Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_023548641.1 thioredoxin-like protein 4B [Cucurbita pepo subsp. pepo]9.4e-7798.01Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKF+ IALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B1.6e-7493.38Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT K EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFH+KQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLL+KDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6J1DGN8 thioredoxin-like protein 4B7.7e-7797.35Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6J1GQC5 thioredoxin-like protein 4B4.1e-7899.34Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6J1JT18 thioredoxin-like protein 4B1.8e-7899.34Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6P4ATD0 thioredoxin-like protein 4B3.4e-7289.4Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL TLT KREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IALVDIDSE++QVY+ YFDITLIPST+FFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.1e-1635.56Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A  +KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP

P83877 Thioredoxin-like protein 4A1.1e-1635.56Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A  +KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP

Q8BUH1 Thioredoxin-like protein 4B1.4e-4659.6Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT+K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

Q9FE62 Thioredoxin-like protein YLS81.1e-1637.96Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L +   VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A  +KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP

Q9NX01 Thioredoxin-like protein 4B6.2e-4760.26Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT+K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ IPKY LLY+D+
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.5e-6979.47Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL+TLTTK E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +ALVD+DSE++QVY+KYFDITL PST+FFFNAHHMK+DSGTAD
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFH KQDFIDVVEAI+RGAMKGK+IV CP+PPERIPKYQL+YKDV
Subjt:  HTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP8.1e-1837.96Show/hide
Query:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L +   VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A  +KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFHEKQDFIDVVEAIFRGAMKGKLIVNCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTATCTTTTAAGGACCTTAACAACGAAGAGAGAAGTGGATTCCATCATTAGGGACACTATTGATAAGGTTCTCATTCTCCGATTTGGGCGGTGTTCCGATTCAGT
TTGTCTCCTCCTTGACGATATTCTTGCTAAGTGCGCTCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACATCAAGT
ACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCACGAA
AAGCAGGATTTTATTGATGTAGTGGAGGCAATATTTAGGGGAGCTATGAAAGGCAAGCTCATTGTGAATTGTCCATTGCCTCCTGAACGAATTCCAAAATACCAGTTATT
ATACAAGGACGTGTAG
mRNA sequenceShow/hide mRNA sequence
GAGAAGGAGGATGAGCTATCTTTTAAGGACCTTAACAACGAAGAGAGAAGTGGATTCCATCATTAGGGACACTATTGATAAGGTTCTCATTCTCCGATTTGGGCGGTGTT
CCGATTCAGTTTGTCTCCTCCTTGACGATATTCTTGCTAAGTGCGCTCGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTT
TACATCAAGTACTTTGACATAACTCTTATACCGTCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGC
TTTTCACGAAAAGCAGGATTTTATTGATGTAGTGGAGGCAATATTTAGGGGAGCTATGAAAGGCAAGCTCATTGTGAATTGTCCATTGCCTCCTGAACGAATTCCAAAAT
ACCAGTTATTATACAAGGACGTGTAGGAGACGAATTGGCACCAAAAGGTTCTACTGAATTCTCCTGCCTCCTAGTTTATATTTAACTAGTTGTTTGATCGGATCAGTTGA
TCTCGTGAAGTCCAATTCGGGTGAATTTCAGTCGAGTTTCCATAGCTAAGAATGCCTTCTATTAATCGAGATTCCGCGAAGAATGTTGCCAAAATCCCATCAACAAAAAA
AGAAAATGTTTTCGTCGCTTGGAAGCAATGGAATAAATGGTTCAAAGAGGTGTCTTTTTCTTCTGTGATTCACATAGTTATTATTTATCTACATCACGTCTTTCTATTAT
TTGGTGTATTGTGGTGTGAGAACTGACTTGTTGATATCAACCATGAAGCCCTTTGAGCAGGTCCCAGCTTCCAAGTTGTGGATATTAGCTGGGTCATGAGTCTGAGCATG
GAGGTTAGTTTCTTTTTTTAAGCATCCAATATGAATTGCATCCTCCCAGTAAGCAACAAGAAATGATGTCAATAAATACTCTGACTAGATGAAAATCATTAGTACTTTGT
TTAAAATATACTTAATCTTTTACAATATTCATTAGTAGAAGGGAAAAAAAAAAAAATGTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGCTTA
Protein sequenceShow/hide protein sequence
MSYLLRTLTTKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHE
KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV