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Carg25549 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25549
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA polymerase sigma factor
Genome locationCarg_Chr07:4788449..4790175
RNA-Seq ExpressionCarg25549
SyntenyCarg25549
Gene Ontology termsGO:0071482 - cellular response to light stimulus (biological process)
GO:2000142 - regulation of DNA-templated transcription, initiation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0016987 - sigma factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595231.1 RNA polymerase sigma factor sigF, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.7e-1295.24Show/hide
Query:  ARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQ
        ARR TSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ+
Subjt:  ARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQ
KAG7027252.1 hypothetical protein SDJN02_11264, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-41100Show/hide
Query:  MKGAKATMSILSGNLHKAVEWLDARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADHDTTFQAYDKLALSTII
        MKGAKATMSILSGNLHKAVEWLDARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADHDTTFQAYDKLALSTII
Subjt:  MKGAKATMSILSGNLHKAVEWLDARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADHDTTFQAYDKLALSTII
XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia]1.7e-0983.33Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
        D RR T+ENFDP + LRLFLW PETKKLLTVQEESELIVQIQ
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
XP_022962908.1 RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata]1.2e-1293.02Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQ
        DARR TSENFDPKNLLRLFLWAPETK+LLTVQEESELIVQIQ+
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQ
XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida]4.8e-0971.43Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
        D+RR T ENFDP + LRLFLW PETKKLLTV+EESELIVQIQ  +  D+
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
TrEMBL top hitse value%identityAlignment
A0A0A0KEQ6 RNA polymerase sigma factor3.1e-0971.43Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
        D+RR TSE FDP + LRLFLW PETKKLLT QEESELIVQIQ  +  D+
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X16.8e-0969.39Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
        D+RR TSE FDP + LRLFLW PETKKLLT QEES+LIVQIQ  +  D+
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
A0A5A7V893 RNA polymerase sigma factor sigF6.8e-0969.39Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
        D+RR TSE FDP + LRLFLW PETKKLLT QEES+LIVQIQ  +  D+
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADH
A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic8.0e-1083.33Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
        D RR T+ENFDP + LRLFLW PETKKLLTVQEESELIVQIQ
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
A0A6J1HG61 RNA polymerase sigma factor sigF, chloroplastic-like5.9e-1393.02Show/hide
Query:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQ
        DARR TSENFDPKNLLRLFLWAPETK+LLTVQEESELIVQIQ+
Subjt:  DARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQ
SwissProt top hitse value%identityAlignment
Q9LD95 RNA polymerase sigma factor sigF, chloroplastic3.7e-0451.22Show/hide
Query:  ARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
        A++   +  D  + L+LFLW PETK+LLT +EE+ELI  IQ
Subjt:  ARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
Arabidopsis top hitse value%identityAlignment
AT2G36990.1 RNApolymerase sigma-subunit F2.6e-0551.22Show/hide
Query:  ARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ
        A++   +  D  + L+LFLW PETK+LLT +EE+ELI  IQ
Subjt:  ARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGAGCCAAAGCAACCATGAGCATCTTGTCTGGAAACTTGCATAAAGCGGTTGAGTGGCTTGATGCACGGAGAACAACAAGTGAAAATTTTGATCCTAAGAATCT
TCTACGACTGTTCTTGTGGGCTCCTGAAACAAAGAAGCTTTTAACAGTTCAAGAAGAGTCTGAGTTGATTGTCCAAATCCAGCAACCTGTATGGGCTGACCATGATACCA
CTTTTCAGGCATATGATAAACTAGCTCTATCTACCATAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGAGCCAAAGCAACCATGAGCATCTTGTCTGGAAACTTGCATAAAGCGGTTGAGTGGCTTGATGCACGGAGAACAACAAGTGAAAATTTTGATCCTAAGAATCT
TCTACGACTGTTCTTGTGGGCTCCTGAAACAAAGAAGCTTTTAACAGTTCAAGAAGAGTCTGAGTTGATTGTCCAAATCCAGCAACCTGTATGGGCTGACCATGATACCA
CTTTTCAGGCATATGATAAACTAGCTCTATCTACCATAATCTGA
Protein sequenceShow/hide protein sequence
MKGAKATMSILSGNLHKAVEWLDARRTTSENFDPKNLLRLFLWAPETKKLLTVQEESELIVQIQQPVWADHDTTFQAYDKLALSTII