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Carg25641 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25641
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationCarg_Chr01:11333908..11335458
RNA-Seq ExpressionCarg25641
SyntenyCarg25641
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608259.1 Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.6e-6296.48Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPR-GAHSHVSQAMSDD-EEEEDDDDDDGGNGSDGMRNDMMVDA
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPR GAHSHVSQAMSDD EEEEDDDDDDGGNGSDGMRNDMMVDA
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPR-GAHSHVSQAMSDD-EEEEDDDDDDGGNGSDGMRNDMMVDA

Query:  I--QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        I  QQQQQPRAVNQPRRPEAS+PAEDGWVQVTSRRSSRGTRN
Subjt:  I--QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

KAG7037608.1 hypothetical protein SDJN02_01237, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-66100Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQ
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQ
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQ

Query:  QQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        QQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
Subjt:  QQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

XP_022940503.1 pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]2.2e-6497.84Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDD-EEEEDDDDDDGGNGSDGMRNDMMVDAI
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDD EEEE+DDDDDGGNG DGMRNDMMVDAI
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDD-EEEEDDDDDDGGNGSDGMRNDMMVDAI

Query:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
Subjt:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

XP_022982103.1 pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]3.1e-5892.96Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSD--DEEEEDDDDDDG--GNGSDGMRNDMMV
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSI RLRQSPLPRGAHSHVSQAMSD  +EEEEDDDDDDG  GNGSDGMRNDMMV
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSD--DEEEEDDDDDDG--GNGSDGMRNDMMV

Query:  DAIQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        DAI  QQQPRAVNQ  RPEASAPAEDGWVQVTSRRSSRGTRN
Subjt:  DAIQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

XP_023524387.1 pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo]2.5e-6097.12Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAI-
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPL RGAHSHVSQAMSDDEEEE DDDDDGGNGSDGMRNDMMVDAI 
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAI-

Query:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        QQQQQPRAVNQP RPEASAPAEDGWVQVTSRRSSRGTRN
Subjt:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

TrEMBL top hitse value%identityAlignment
A0A5D3E598 Pre-rRNA-processing protein TSR26.5e-3870.8Show/hide
Query:  LYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQQ
        LYIDDLE ILDE MLSLNTQVDDGSIEEVAE+LIFMHEECVD NFSSIERLRQSP P+ AH+HV+QA SDD++++D ++D         RNDMMVDA+Q 
Subjt:  LYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQQ

Query:  QQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
         Q  R VN    PEA+A AEDGWVQVTSRR +RGTRN
Subjt:  QQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

A0A6J1F8A7 pre-rRNA-processing protein TSR2 homolog4.1e-4075Show/hide
Query:  LYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDG---GNGSDGMRNDMMVDA
        LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSPLPR A SHVSQ MSDD+EEED+++      GNG    R DMMVDA
Subjt:  LYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDG---GNGSDGMRNDMMVDA

Query:  IQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        I    QP  VNQP  PEA+A AEDGWVQVTSRR SRGTRN
Subjt:  IQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

A0A6J1FPH6 pre-rRNA-processing protein TSR2 homolog1.1e-6497.84Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDD-EEEEDDDDDDGGNGSDGMRNDMMVDAI
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDD EEEE+DDDDDGGNG DGMRNDMMVDAI
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDD-EEEEDDDDDDGGNGSDGMRNDMMVDAI

Query:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
Subjt:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

A0A6J1IM14 pre-rRNA-processing protein TSR2 homolog6.3e-4176.26Show/hide
Query:  LYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDD--DDDGGNGSDGMRNDMMVDAI
        LYIDDLEMILDE +LSLNTQVDDGSIEEVAE+LI MHEEC+DGNFSSIE+LRQSPLP+ A SHVSQ MSDDEEE++++  D D GNG    R DMMVDAI
Subjt:  LYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDD--DDDGGNGSDGMRNDMMVDAI

Query:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
            QPR VNQP  PEA+A AEDGWVQVTSRR SRGTRN
Subjt:  QQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

A0A6J1J400 pre-rRNA-processing protein TSR2 homolog1.5e-5892.96Show/hide
Query:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSD--DEEEEDDDDDDG--GNGSDGMRNDMMV
        TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSI RLRQSPLPRGAHSHVSQAMSD  +EEEEDDDDDDG  GNGSDGMRNDMMV
Subjt:  TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSD--DEEEEDDDDDDG--GNGSDGMRNDMMV

Query:  DAIQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        DAI  QQQPRAVNQ  RPEASAPAEDGWVQVTSRRSSRGTRN
Subjt:  DAIQQQQQPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region7.1e-0550Show/hide
Query:  IDDLEMILDET-MLSLNTQVDDGSIEEVAEKLIFMHEECVDG
        ++++E +L E+ +LS NT+++DGSIEEVAE+L+ +HEE + G
Subjt:  IDDLEMILDET-MLSLNTQVDDGSIEEVAEKLIFMHEECVDG

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region6.4e-1438.52Show/hide
Query:  IDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQQQQ
        I+ L  +LD+ +  LNT  +DGS++EVA  L+ ++E+C +GN+  +E LR +     A S V  +  DDEE +D+DDD           DMMVDA  Q+Q
Subjt:  IDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQQQQ

Query:  QPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN
        +   V++P        A+DGW  V+SR+ ++G RN
Subjt:  QPRAVNQPRRPEASAPAEDGWVQVTSRRSSRGTRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACACTATACATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAAATTGATTTTCAT
GCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGCTATGAGTGATGATGAAG
AAGAAGAAGATGATGATGATGATGATGGTGGAAATGGAAGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAG
CCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAG
mRNA sequenceShow/hide mRNA sequence
ACACTATACATCGATGACTTAGAAATGATTCTTGATGAAACTATGCTTTCGTTGAACACTCAGGTTGATGATGGTAGCATTGAGGAGGTAGCTGAAAAATTGATTTTCAT
GCATGAGGAGTGTGTGGATGGTAACTTTAGCTCTATCGAAAGGTTAAGACAATCCCCTCTTCCACGAGGTGCTCATTCTCATGTTAGTCAGGCTATGAGTGATGATGAAG
AAGAAGAAGATGATGATGATGATGATGGTGGAAATGGAAGCGATGGAATGAGAAATGATATGATGGTGGATGCCATACAACAACAACAACAACCCAGGGCTGTCAATCAG
CCCCGGCGTCCAGAGGCCTCAGCTCCAGCTGAAGATGGATGGGTTCAAGTCACATCAAGAAGAAGTAGTAGGGGTACAAGAAATTAGTCCCAACCTCTCTCAAATTAATC
CATTTTACTGCCCACTACCCATCAATTTTGTTTGGTGTGAAGATATATATATATA
Protein sequenceShow/hide protein sequence
TLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSPLPRGAHSHVSQAMSDDEEEEDDDDDDGGNGSDGMRNDMMVDAIQQQQQPRAVNQ
PRRPEASAPAEDGWVQVTSRRSSRGTRN