; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg25646 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25646
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionER membrane protein complex subunit 6
Genome locationCarg_Chr06:9592791..9594886
RNA-Seq ExpressionCarg25646
SyntenyCarg25646
Gene Ontology termsGO:0006996 - organelle organization (biological process)
GO:0072546 - ER membrane protein complex (cellular component)
InterPro domainsIPR008504 - ER membrane protein complex subunit 6
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597582.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. sororia]7.6e-6997.96Show/hide
Query:  LTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG
        LTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG
Subjt:  LTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG

Query:  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCIL
        FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM  +L
Subjt:  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCIL
KAG7029026.1 ER membrane protein complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-109100Show/hide
Query:  NLRFIFFFNLTQKLFCRLTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLS
        NLRFIFFFNLTQKLFCRLTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLS
Subjt:  NLRFIFFFNLTQKLFCRLTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLS

Query:  IIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFLDWKKVRRHNREEEISELDQFVYFKLTSVEFC
        IIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFLDWKKVRRHNREEEISELDQFVYFKLTSVEFC
Subjt:  IIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFLDWKKVRRHNREEEISELDQFVYFKLTSVEFC

Query:  LKCMNIQI
        LKCMNIQI
Subjt:  LKCMNIQI
XP_022137968.1 ER membrane protein complex subunit 6 [Momordica charantia]1.2e-4288.79Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
XP_022937062.1 ER membrane protein complex subunit 6 [Cucurbita moschata]8.2e-4797.2Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
XP_022972030.1 ER membrane protein complex subunit 6 [Cucurbita maxima]1.4e-4696.26Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSSNASEKKSSDAVDD+PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
TrEMBL top hitse value%identityAlignment
A0A0A0LZ06 ER membrane protein complex subunit 63.2e-4186.92Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS AS+KKSSD  DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTGFIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
A0A1S3BQB0 ER membrane protein complex subunit 61.5e-4187.85Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS AS+KKSSD+ DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFL 
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
A0A6J1CBS9 ER membrane protein complex subunit 65.9e-4388.79Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSS ASEKKS++A DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTGFI YFLVMAITS+GLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
A0A6J1FFH8 ER membrane protein complex subunit 64.0e-4797.2Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
A0A6J1I7D9 ER membrane protein complex subunit 66.7e-4796.26Show/hide
Query:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
        MAGYSSNASEKKSSDAVDD+PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS
Subjt:  MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLS

Query:  GLMVCIL
        GLM  +L
Subjt:  GLMVCIL
SwissProt top hitse value%identityAlignment
Q3ZCG8 ER membrane protein complex subunit 61.7e-0735.87Show/hide
Query:  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
        P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KA   ++ YF+S   +   G + GL   +L   FL
Subjt:  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
Q68EU8 ER membrane protein complex subunit 61.6e-0840Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
        ++ N  ++ Y RT +S + G  AGILG TSL GFIFYFL   + S+ L  K+G  ++ YF+S   +   G + GL   +L   FL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
Q6GLC5 ER membrane protein complex subunit 62.7e-0838.82Show/hide
Query:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
        ++ N  ++ Y RT +S + G  AGILG T+L GFIFYFL   + S+ L  K+G  ++ YF+S   +   G + GL   +L   FL
Subjt:  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
Q9BV81 ER membrane protein complex subunit 61.6e-0836.96Show/hide
Query:  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
        P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KAG  ++ YF+S   +   G + GL   +L   FL
Subjt:  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
Q9CQW0 ER membrane protein complex subunit 61.6e-0836.96Show/hide
Query:  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
        P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KAG  ++ YF+S   +   G + GL   +L   FL
Subjt:  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFL
Arabidopsis top hitse value%identityAlignment
AT5G49540.1 Rab5-interacting family protein3.9e-3166Show/hide
Query:  ASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCIL
        +SEK+S D + DIP  +AENLQNNLK+I  SRTFLSII GV+AGI+GF  L GF+FYF+VM ITS+GL AKAGFS   YF+SWN++L DGFL GLM  +L
Subjt:  ASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATTTGAGATTTATATTTTTTTTTAATTTAACCCAGAAATTATTTTGTAGGCTAACGGGAGAGCTCAACTCGAGAAGAACAAGACTCACAGCTGCCGCTGTTCGTAGACA
AAGCCTTACCTTCCTCCCCTTGGATCGATCGCAATCAACTGATCAGACGCCGTTCGAAGCTATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGG
TCGACGATATACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTG
GGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTG
GAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGGTATGCATTCTCTGCTCTTATTTTTTAGATTGGAAAAAAGTTAGAAGACACAATAGAGAAGAGGAAATAA
GTGAATTAGATCAATTTGTTTACTTCAAACTGACCTCTGTTGAATTCTGTCTTAAATGTATGAATATTCAGATTTAA
mRNA sequenceShow/hide mRNA sequence
AATTTGAGATTTATATTTTTTTTTAATTTAACCCAGAAATTATTTTGTAGGCTAACGGGAGAGCTCAACTCGAGAAGAACAAGACTCACAGCTGCCGCTGTTCGTAGACA
AAGCCTTACCTTCCTCCCCTTGGATCGATCGCAATCAACTGATCAGACGCCGTTCGAAGCTATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGG
TCGACGATATACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTG
GGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTG
GAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGGTATGCATTCTCTGCTCTTATTTTTTAGATTGGAAAAAAGTTAGAAGACACAATAGAGAAGAGGAAATAA
GTGAATTAGATCAATTTGTTTACTTCAAACTGACCTCTGTTGAATTCTGTCTTAAATGTATGAATATTCAGATTTAATGGTTCTAGGTTTTTTAAGTTAGAAGCCCTTTC
ATGTTAGTTGCATACGTCTGTTCTAGATTGTGAAGAAATTAGTTGCATACCTTTTAGGGTGATTTCTTATTCTGGTTAGGCTTTTATACCTTGCTGATTTTTGTAAAATT
TTCTCATTTCCTCTTAAGGAAAATAATGGAAAATGCAATTCAAATGAGGGTTTATTCGGTGAGATTGTAATTGAAGGATATTTTGAATTAGAGATGCCTTGTTAAACAAA
GAGATAGAAAAAGGGATTACAATTTGAGGTCGTTTGATCATACTGATGGGTTAAGGATATAAAAATAGAGGAACAAGTTGATTTCAGGAGACTATCAATATGGGAAGTGG
AAACGTTAAGGGATTTAACTTCTTTTCCTATTCACTGTACACCTCCAATTATCCAATTCCTACAGTGAACCTTGAATGGCCTGAAAGACTGAGTTGGATATAACTGGAAA
AAAATAGGACTAAATCCCGGAGCTCCCAAAATCCAATGGGCGTTTCTTGGCTTTGAATCAAGATTATGGCCTACTAAACAATGAAATGATTAGATGGAGGTTTTCTAGGA
ATTGAAATTCTGTGGTAGGGGGTTGTTAACGGATGCCTCTACTTTCTTAGAACTCAAAGGGCACAATTGTACGACCCATAGAATAGATAATGGTATGAAATTCTTGAGTA
TTTGATCTGACAACCTCGCTGGAAAACAAGACCTTTAGAACTAAAATATCCAATGTGAGATTCCACATCGGTTGGAGAGGGAATGAAACATTTCTTATATATAAGGGTGT
GGAAACCTCTCATTAGTAGACACATTTTAAAAACCTTGAGAGGAAGCCCGAAAGGGAAAGCCAAAAGAGGATAGTATATGCTAGCGG
Protein sequenceShow/hide protein sequence
NLRFIFFFNLTQKLFCRLTGELNSRRTRLTAAAVRRQSLTFLPLDRSQSTDQTPFEAMAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGIL
GFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMVCILCSYFLDWKKVRRHNREEEISELDQFVYFKLTSVEFCLKCMNIQI