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Carg25666 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25666
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear transcription factor Y subunit B-1-like isoform X7
Genome locationCarg_Chr04:1404002..1404597
RNA-Seq ExpressionCarg25666
SyntenyCarg25666
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600098.1 Nuclear transcription factor Y subunit B-8, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1490Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLST
        CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ I+  +ST
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLST
KAG7030772.1 hypothetical protein SDJN02_04809, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-20100Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
        CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
XP_022942123.1 nuclear transcription factor Y subunit B-1-like isoform X7 [Cucurbita moschata]1.2e-1898.18Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
        CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIISSLSTCQHAI
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
XP_022986170.1 nuclear transcription factor Y subunit B-1-like isoform X7 [Cucurbita maxima]4.7e-1896.36Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
        CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIIS LSTCQHAI
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
XP_023542143.1 nuclear transcription factor Y subunit B-1-like isoform X4 [Cucurbita pepo subsp. pepo]8.9e-1794.55Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
        CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIIS LST QHAI
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
TrEMBL top hitse value%identityAlignment
A0A6J1FQE1 nuclear transcription factor Y subunit B-10-like isoform X37.6e-1497.67Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV
        CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ+
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV
A0A6J1FTZ7 nuclear transcription factor Y subunit B-1-like isoform X76.0e-1998.18Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
        CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIISSLSTCQHAI
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
A0A6J1JD70 nuclear transcription factor Y subunit B-1-like isoform X17.6e-1497.67Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV
        CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ+
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV
A0A6J1JDC0 nuclear transcription factor Y subunit B-1-like isoform X72.3e-1896.36Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
        CDAKGSSRGGEESAKRDAVGALPGQNS QYLQPGALTYINTQVIIS LSTCQHAI
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI
A0A6J1JFM8 nuclear transcription factor Y subunit B-1-like isoform X37.6e-1497.67Show/hide
Query:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV
        CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQ+
Subjt:  CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGAC
CTACATTAACACTCAAGTAATAATCTCTTCTCTCTCAACTTGTCAACACGCTATTTAG
mRNA sequenceShow/hide mRNA sequence
TGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGAC
CTACATTAACACTCAAGTAATAATCTCTTCTCTCTCAACTTGTCAACACGCTATTTAGGAATATCCTCCTTTTCATTGCTAATAATTGGACTGAAATTCATGGTTATTAT
TAGCTTTTTACCGTTGCCAGTATTGTCTCTAATTGTTGAGTGTTGCTTAGGAGATAGACCAGTTTCTTCACTTCCCTTCATATATGTATCCTACCTTTTCTTCTCATATA
TCATTTGCTTGTCCAGAAACTCATAGGATTTCATCCTAGGTAGTTTATATACTTTTTTTCATATGCCTAGTTTCACCAGGGCAGCCAATGGCAGTTTATATTTAAATGAT
ATGCATTTAATTTTGTAAGAAGATACA
Protein sequenceShow/hide protein sequence
CDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVIISSLSTCQHAI