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Carg25668 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25668
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLow temperature and salt responsive protein family
Genome locationCarg_Chr04:1420686..1423151
RNA-Seq ExpressionCarg25668
SyntenyCarg25668
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000612 - Proteolipid membrane potential modulator


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030774.1 Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-125100Show/hide
Query:  MGLRFRICGHTHKVFDENPQWSNVREKLVRTSNFIHKTPNSKSATRVSLFSHVNRERIMGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYI
        MGLRFRICGHTHKVFDENPQWSNVREKLVRTSNFIHKTPNSKSATRVSLFSHVNRERIMGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYI
Subjt:  MGLRFRICGHTHKVFDENPQWSNVREKLVRTSNFIHKTPNSKSATRVSLFSHVNRERIMGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYI

Query:  PGIIYAIYVLSCDIIIDMINRIYDKIYGESETLSLLYANNKTCSQWAGIFSQILSFQQKTPTEQNFYQMKMNGWDGVGSNPQDCYTLEQQLSKKRKHEVS
        PGIIYAIYVLSCDIIIDMINRIYDKIYGESETLSLLYANNKTCSQWAGIFSQILSFQQKTPTEQNFYQMKMNGWDGVGSNPQDCYTLEQQLSKKRKHEVS
Subjt:  PGIIYAIYVLSCDIIIDMINRIYDKIYGESETLSLLYANNKTCSQWAGIFSQILSFQQKTPTEQNFYQMKMNGWDGVGSNPQDCYTLEQQLSKKRKHEVS

Query:  KPFGFQISSSMLHFDGCDWKT
        KPFGFQISSSMLHFDGCDWKT
Subjt:  KPFGFQISSSMLHFDGCDWKT

XP_004143609.2 uncharacterized protein LOC101203086 [Cucumis sativus]1.7e-18100Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

XP_022941664.1 low temperature-induced protein lt101.2 [Cucurbita moschata]1.7e-18100Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

XP_026412058.1 low temperature-induced protein lt101.2 [Papaver somniferum]2.9e-1898.08Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

XP_038893278.1 low temperature-induced protein lt101.2 [Benincasa hispida]2.9e-1898.08Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEI+LAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

TrEMBL top hitse value%identityAlignment
A0A0A0KRZ2 Uncharacterized protein8.3e-19100Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

A0A1S3BED1 low temperature-induced protein lt101.21.4e-1898.08Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

A0A6J1CCW8 low temperature-induced protein lt101.21.8e-1898.08Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

A0A6J1FUC5 low temperature-induced protein lt101.28.3e-19100Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

A0A6J1KKG3 low temperature-induced protein lt101.28.3e-19100Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

SwissProt top hitse value%identityAlignment
P68178 Salt stress-induced hydrophobic peptide ESI31.3e-1682.69Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

P68179 Low temperature-induced protein lt101.11.3e-1682.69Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

Q9ARD5 Low temperature-induced protein lt101.25.7e-1780.77Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        M S TF+E+ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

Q9ZNQ7 Hydrophobic protein RCI2A3.0e-1883.02Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS
        M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL+
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS

Q9ZNS6 Hydrophobic protein RCI2B6.3e-1669.81Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS
        M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y+++
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS

Arabidopsis top hitse value%identityAlignment
AT1G57550.1 Low temperature and salt responsive protein family6.1e-1466.04Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS
        MGS  F+E++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL+
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS

AT2G38905.1 Low temperature and salt responsive protein family7.9e-2296.15Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
        MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL

AT3G05880.1 Low temperature and salt responsive protein family2.1e-1983.02Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS
        M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL+
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS

AT3G05890.1 Low temperature and salt responsive protein family4.5e-1769.81Show/hide
Query:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS
        M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y+++
Subjt:  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLS

AT4G30650.1 Low temperature and salt responsive protein family4.3e-1274Show/hide
Query:  ETFVEIILAILLPPLGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVL
        E F EI++AILLPPLGV L+ G C VEF ICL+LTILGYIPGIIYA+YV+
Subjt:  ETFVEIILAILLPPLGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACTGAGATTTCGAATCTGTGGGCATACCCACAAGGTGTTCGATGAAAATCCTCAGTGGAGTAATGTTAGAGAAAAACTTGTAAGAACTTCAAATTTTATTCACAA
AACACCAAATAGCAAAAGTGCCACACGTGTTAGTCTCTTCTCCCACGTAAACAGAGAAAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTC
CACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTG
AGCTGCGATATTATCATAGATATGATAAATAGAATCTACGATAAAATCTATGGAGAGTCGGAGACACTTTCCTTGTTGTATGCTAACAATAAAACTTGTTCGCAATGGGC
CGGAATTTTTAGCCAAATTTTGTCATTCCAACAAAAAACGCCGACGGAGCAAAATTTTTATCAAATGAAAATGAACGGCTGGGATGGGGTTGGGTCCAATCCCCAAGATT
GCTATACATTGGAGCAACAGCTATCCAAAAAAAGAAAGCATGAAGTTTCAAAACCATTTGGCTTCCAAATAAGCTCCTCCATGCTTCACTTCGATGGCTGTGATTGGAAA
ACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACTGAGATTTCGAATCTGTGGGCATACCCACAAGGTGTTCGATGAAAATCCTCAGTGGAGTAATGTTAGAGAAAAACTTGTAAGAACTTCAAATTTTATTCACAA
AACACCAAATAGCAAAAGTGCCACACGTGTTAGTCTCTTCTCCCACGTAAACAGAGAAAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTC
CACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTG
AGCTGCGATATTATCATAGATATGATAAATAGAATCTACGATAAAATCTATGGAGAGTCGGAGACACTTTCCTTGTTGTATGCTAACAATAAAACTTGTTCGCAATGGGC
CGGAATTTTTAGCCAAATTTTGTCATTCCAACAAAAAACGCCGACGGAGCAAAATTTTTATCAAATGAAAATGAACGGCTGGGATGGGGTTGGGTCCAATCCCCAAGATT
GCTATACATTGGAGCAACAGCTATCCAAAAAAAGAAAGCATGAAGTTTCAAAACCATTTGGCTTCCAAATAAGCTCCTCCATGCTTCACTTCGATGGCTGTGATTGGAAA
ACGTAG
Protein sequenceShow/hide protein sequence
MGLRFRICGHTHKVFDENPQWSNVREKLVRTSNFIHKTPNSKSATRVSLFSHVNRERIMGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
SCDIIIDMINRIYDKIYGESETLSLLYANNKTCSQWAGIFSQILSFQQKTPTEQNFYQMKMNGWDGVGSNPQDCYTLEQQLSKKRKHEVSKPFGFQISSSMLHFDGCDWK
T