; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg25683 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25683
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionThioredoxin-like protein YLS8
Genome locationCarg_Chr04:1488437..1489603
RNA-Seq ExpressionCarg25683
SyntenyCarg25683
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0750948.1 hypothetical protein [Gossypium gossypioides]2.2e-7598.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFI+IIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

RWV83246.1 hypothetical protein GW17_00055177 [Ensete ventricosum]1.7e-7597.89Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_016177040.1 thioredoxin-like protein YLS8 [Arachis ipaensis]5.7e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_022942612.1 thioredoxin-like protein YLS8 [Cucurbita moschata]1.5e-76100Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

XP_031129557.1 thioredoxin-like protein YLS8 [Ipomoea triloba]1.7e-7597.18Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLV+IRFGHDWDETCMQMDEVLASVAET+KNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

TrEMBL top hitse value%identityAlignment
A0A444CBJ8 Uncharacterized protein8.1e-7697.89Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVL+SVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINI+ETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A444XN48 Thioredoxin-like protein2.8e-7699.3Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1FV92 thioredoxin-like protein YLS87.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

A0A6J1JIE4 thioredoxin-like protein YLS87.3e-77100Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

S4U0X2 YLS81.1e-7598.59Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQAIL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFI+IIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.7e-7085.21Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE ++IIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

P83877 Thioredoxin-like protein 4A1.7e-7085.21Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE ++IIETVYRGARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

P87215 Mitosis protein dim15.4e-6176.06Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINW L+DKQE I+IIET++RGARKG+GLVI+PKDYST++RY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

Q75BD8 Spliceosomal protein DIB13.0e-5167.39Show/hide
Query:  SYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK
        S  LPHLHSGW VDQAI+TEEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK
Subjt:  SYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNK

Query:  INWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTK
        +N+ + +KQE I+IIETV+RGAR+ +GLV++P DY+ K
Subjt:  INWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTK

Q9FE62 Thioredoxin-like protein YLS86.3e-7897.89Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFI+IIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP2.4e-1937.23Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT
        MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + LVD+ +  D     + +D    PST+ FFF   H+ +D GT
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGT

Query:  GNNNKINWALKDKQEFINIIETVYRGARKGRGLVIAP
         ++ K   A   KQ+FI+++E +YRGA KG+ +V  P
Subjt:  GNNNKINWALKDKQEFINIIETVYRGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP4.5e-7997.89Show/hide
Query:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
        MSYLLPHLHSGWAVDQ+IL EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN
Subjt:  MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFI+IIETVYRGARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFINIIETVYRGARKGRGLVIAPKDYSTKYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGAC
CTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACG
AGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAA
GAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTACTTGCTGCCGCATCTTCACTCTGGATGGGCCGTTGATCAGGCAATCCTCACCGAAGAAGAACGCCTTGTGGTTATTCGTTTCGGTCATGACTGGGACGAGAC
CTGTATGCAGATGGATGAGGTGTTGGCCTCAGTTGCTGAGACGATCAAGAACTTTGCAGTAATATACCTTGTGGATATCACTGAGGTTCCTGATTTCAACACAATGTACG
AGCTGTATGATCCTTCCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGTACTGGTAACAACAATAAGATAAACTGGGCCCTCAAGGATAAGCAA
GAGTTCATCAATATCATTGAAACAGTCTATCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA
Protein sequenceShow/hide protein sequence
MSYLLPHLHSGWAVDQAILTEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
EFINIIETVYRGARKGRGLVIAPKDYSTKYRY