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Carg25778 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25778
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPSII 6.1 kDa protein
Genome locationCarg_Chr08:1768447..1769042
RNA-Seq ExpressionCarg25778
SyntenyCarg25778
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593088.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.0e-67100Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_022959615.1 photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita moschata]2.3e-6699.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_022959616.1 photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucurbita moschata]5.8e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_023004262.1 photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita maxima]7.5e-6598.56Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

XP_023514758.1 photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]8.3e-6496.38Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQ+RP PAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVEN SCNL MGASLIA ACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A1S3BQI5 PSII 6.1 kDa protein6.9e-5688.49Show/hide
Query:  MAAVASASAAAVRSSLVQNRP-LPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
        MAAV SA+AAAVR+SLVQNRP LP+ASP  FLL GLPALGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRP-LPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein2.8e-6599.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1H6S9 PSII 6.1 kDa protein1.1e-6699.28Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1KPY5 PSII 6.1 kDa protein3.6e-6598.56Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

A0A6J1KYY4 PSII 6.1 kDa protein2.6e-6397.84Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF
        MAAVASASAAAVRSSLVQNRPLPAASPTTFLL GLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA ACAA MSSPAMALVDERLSTEGTGLPF
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAA-ACAATMSSPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
Subjt:  GLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.6e-3058.39Show/hide
Query:  ASAAAVRSSLVQNRPLPAASPTTFL---LVGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL
        AS  A  S++   RP     PT  +   ++GLP +G K+GGVRC ++ K     +     +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGL
Subjt:  ASAAAVRSSLVQNRPLPAASPTTFL---LVGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWTF+ VYTS+LEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic1.6e-3357.86Show/hide
Query:  MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA + ++S+A++  R+SLV N  +  +S     ++GLP++ KR  V C ++ K +      + N  MGASL+AAA AAT+S+PAMALVDER+STEGTGLP
Subjt:  MAAVASASAAAV--RSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        FGLSNNLLGWIL GVFG IW  Y VY S LEEDEESGLSL
Subjt:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.1e-2151.82Show/hide
Query:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGG--VRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP
        MA V++A+A +V +  V   PL           GLP +  R    VRC    +A       +   G GASL+A A  A   +PAMALVDER+STEGTGL 
Subjt:  MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGG--VRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLP

Query:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESG
         GLSNNLLGWILLGVFG IW+ Y +YTS LEEDEESG
Subjt:  FGLSNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic1.6e-0942.47Show/hide
Query:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLE--EDEESGLSL
        ++++   A   + PA ALVDER++ +GTG PFG+++ +LGW+LLGVFG +W  + +    L   ED + GL L
Subjt:  SLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFGFIWTFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.2e-3158.39Show/hide
Query:  ASAAAVRSSLVQNRPLPAASPTTFL---LVGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL
        AS  A  S++   RP     PT  +   ++GLP +G K+GGVRC ++ K     +     +G G S  A AA  A MS+PAMALVDER+STEGTGLPFGL
Subjt:  ASAAAVRSSLVQNRPLPAASPTTFL---LVGLPALG-KRGGVRCCVDGKANGEVENKSCNLGMGASLIA-AACAATMSSPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWTF+ VYTS+LEEDEESGLSL
Subjt:  SNNLLGWILLGVFGFIWTFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGATCTTCTCTGGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGTAGGGTTGCCTGC
ATTGGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGATGGAAAGGCTAATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGT
GTGCTGCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACCGAAGGAACTGGCCTCCCGTTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTG
TTGGGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTCTACTCTCGAAGAAGACGAAGAATCAGGCTTATCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
TCTCCGATCCCCATATTCCATTATTGTTCATTTTGCCTCCCAAAGTTCAACGCAAAGATCCCAATGGCCGCCGTCGCCTCCGCCTCTGCCGCCGCCGTCCGATCTTCTCT
GGTTCAGAACCGCCCACTTCCGGCGGCTTCACCCACCACCTTCCTTCTTGTAGGGTTGCCTGCATTGGGTAAGAGAGGAGGAGTAAGGTGTTGTGTGGATGGAAAGGCTA
ATGGAGAAGTGGAAAACAAGTCGTGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCAGCGTGTGCTGCGACCATGTCGAGCCCAGCCATGGCTTTGGTGGATGAGAGA
CTGAGCACCGAAGGAACTGGCCTCCCGTTTGGTTTGAGCAACAATCTTCTTGGTTGGATTCTGTTGGGAGTTTTTGGTTTCATTTGGACATTCTATATCGTTTACACTTC
TACTCTCGAAGAAGACGAAGAATCAGGCTTATCTCTGTAAACCAAACTTGTCATCTTATTATTACGATCGTTGTGGCTAATCTTAG
Protein sequenceShow/hide protein sequence
MAAVASASAAAVRSSLVQNRPLPAASPTTFLLVGLPALGKRGGVRCCVDGKANGEVENKSCNLGMGASLIAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWIL
LGVFGFIWTFYIVYTSTLEEDEESGLSL