CuGenDBv2

Gene ID	Carg25802
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	Carg_Chr07:5130418..5131641
RNA-Seq Expression	Carg25802
Synteny	Carg25802
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6595269.1 Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-218

99.26

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKL PSQQSHHQN SNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
        ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVAR+DEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
Subjt:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

1.4e-199

92.42

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQS+PSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADY+  +RVKT DDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        EN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYAS
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S
Subjt:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYAS

Query:  EEGSSEDDD
        +EGSSEDDD
Subjt:  EEGSSEDDD

XP_022963248.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata]

6.4e-221

100

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
        ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
Subjt:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_022972715.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita maxima]

8.6e-218

98.77

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPS QNPTPPKLPPSQQSHHQ  SNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKT+DDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
        ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
Subjt:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

3.9e-218

98.77

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKT+DDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCS+TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIE PAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
        ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
Subjt:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

1.9e-194

90.2

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SN+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
         SQTQS+PST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT    
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASE
        + +A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASE

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

1.9e-194

90.2

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SN+SS TPSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
         SQTQS+PST LDSTPS+SKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADYQ  +RVKT    
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASE
        + +A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDEPQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+
Subjt:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASE

Query:  EGSSEDDD
        EGSSEDDD
Subjt:  EGSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

6.7e-200

92.42

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPPLPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQS+PSTPLD+TPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDVLFDDYADY+  +RVKT DDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        EN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYAS
        A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDEP QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S
Subjt:  A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYAS

Query:  EEGSSEDDD
        +EGSSEDDD
Subjt:  EEGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

3.1e-221

100

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
        ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
Subjt:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A6J1I9F9 Mediator of RNA polymerase II transcription subunit 4

4.2e-218

98.77

Show/hide

Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
        MLQHQIVQSPARLGLTNPNSPS QNPTPPKLPPSQQSHHQ  SNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFL

Query:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV
        NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKT+DDV
Subjt:  NSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDV

Query:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
        ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Subjt:  ENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL

Query:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
        ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE
Subjt:  ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

8.3e-06

32.42

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Query:  LNSQTQSAPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRV
        LNSQ       P+D  S  +T   +L L N L    ++++  + +L++   +Q    +I  E+  KD  +   A  LKD E  L+       D       
Subjt:  LNSQTQSAPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRV

Query:  KTSDDVENESLCS----------TTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQLYT
          SD + NE L               V  ++   D++SYAHKIS TT AP  FG    APL     PPAPQ+E MR+S L+T
Subjt:  KTSDDVENESLCS----------TTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQLYT

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

3.9e-136

64.35

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHHQ-----------------NPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS HQ                 + ++ S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHHQ-----------------NPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVL
        F+V PNRA+WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A E+++KD++L AFANKLKDAE+VL
Subjt:  FEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQGHKRVKTSDDVE---NESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS
        D+L DDY+DY+  KR K  +D E   NES  S+TTV+SQLKL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYTFADLD+GLPK+
Subjt:  DVLFDDYADYQGHKRVKTSDDVE---NESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS

Query:  VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQE
        VE+ EK +E +IE P P       + ++ I  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q       GLHRP +
Subjt:  VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQE

Query:  PIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
         IQVR VQLDIL +DDDSSDY+S++ SS+D+D
Subjt:  PIQVRHVQLDILDQDDDSSDYASEEGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

2.7e-137

64.35

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Query:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHHQ-----------------NPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS HQ                 + ++ S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHHQ-----------------NPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVL
        F+V PNRA+WL+AFRGSLP+FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A E+++KD++L AFANKLKDAE+VL
Subjt:  FEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQGHKRVKTSDDVE---NESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS
        D+L DDY+DY+  KR K  +D E   NES  S+TTV+SQLKL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYTFADLD+GLPK+
Subjt:  DVLFDDYADYQGHKRVKTSDDVE---NESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS

Query:  VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQE
        VE+ EK +E +IE P P       + ++ I  LLPPNI VPSGWKPGMPVELPRDLP+PPPGWKPGDPV LPPL+S+   R ++ Q       GLHRP +
Subjt:  VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQE

Query:  PIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
         IQVR VQLDIL +DDDSSDY+S++ SS+D+D
Subjt:  PIQVRHVQLDILDQDDDSSDYASEEGSSEDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATC
CCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTT
TAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACG
CCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCA
AGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATG
ATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATA
TTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAAT
GCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGC
CAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGAT
TTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCT
TCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTG
AAGATGATGATTGA

mRNA sequence

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Protein sequence

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MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPST
PLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDI
LSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRD
LPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD

Carg25802 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome