CuGenDBv2

Gene ID	Carg25824
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein E
Genome location	Carg_Chr05:5924359..5934290
RNA-Seq Expression	Carg25824
Synteny	Carg25824
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR027078 - Small nuclear ribonucleoprotein E

Homology

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GenBank top hits

e value

%identity

Alignment

CAB3482137.1 unnamed protein product [Digitaria exilis]

6.9e-21

77.22

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK +KKSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

KAF9680590.1 hypothetical protein SADUNF_Sadunf06G0137600 [Salix dunnii]

1.8e-21

78.48

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               VN+KKKS+KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

KAG7029942.1 Small nuclear ribonucleoprotein E [Cucurbita argyrosperma subsp. argyrosperma]

6.0e-25

100

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIVNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIVNVKKKSKKSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIVNVKKKSKKSLGRILLKGDNITLMMNTGK

KNA10835.1 hypothetical protein SOVF_140750 isoform B [Spinacia oleracea]

1.2e-20

77.22

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKD RIEGRII               VNVKKK++KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

XP_042990589.1 small nuclear ribonucleoprotein E-like isoform X3 [Carya illinoinensis]

3.1e-21

78.48

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQ+DLRIEGRII               VNVKKKS+KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

TrEMBL top hits

e value

%identity

Alignment

A0A0K9QUA8 Small nuclear ribonucleoprotein E

5.7e-21

77.22

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKD RIEGRII               VNVKKK++KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

A2YR87 Small nuclear ribonucleoprotein E

9.7e-21

75.95

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

B9FZ34 Small nuclear ribonucleoprotein E

9.7e-21

75.95

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

C3SAD8 Small nuclear ribonucleoprotein E

7.4e-21

75.95

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII               +NVKK ++KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

R7W6X2 Small nuclear ribonucleoprotein E

1.7e-20

73.42

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Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPIKARIQIWLFEQKD+RIEGRII               +N+KK ++KSLGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

SwissProt top hits

e value

%identity

Alignment

A1XQR9 Small nuclear ribonucleoprotein E

4.8e-09

44.44

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Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E

4.8e-09

44.44

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Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E

4.8e-09

44.44

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Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E

4.8e-09

44.44

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Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E

4.8e-09

44.44

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Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG II               ++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMN

Arabidopsis top hits

e value

%identity

Alignment

AT2G18740.1 Small nuclear ribonucleoprotein family protein

1.6e-20

64.77

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Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI                V++KK ++K LGRILLKGDNITLMMNTGK
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

AT2G18740.2 Small nuclear ribonucleoprotein family protein

9.0e-11

56.34

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Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLG
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI                V++KK ++K LG
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein

1.6e-20

64.77

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Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI                V++KKK++K LGRILLKGDNITLMMN GK
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRII---------------VNVKKKSKKSLGRILLKGDNITLMMNTGK

Sequences

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CDS sequence

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ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTCAA
TGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGGGGAAGTGA

mRNA sequence

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TTACCCTTTTCCTTCGTTGGAGTGAAGTGGCTGCTTAGCTTAAACCGGAACCAAACTCTCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTT
GTGAGCGAAAGCGGAGAAGTTGGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCC
AACCCATCAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGG
ATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGGGGAAGTGATGGACATTTTTTGGTGCACCCATAATAGAGATAGCGAAGTCAGCCCTTTCATGTTGAAA
CTTGAAGGCCTTGTGTTACCATAGAATGTTCATTTTACAGTCAAATGGTTGGTTGTTTTTGTAGTCTTGTTTGAAGAAAGTAGAATACAGTTTATGCCAGCCATTGCACT
CAACTCAGCCACCTCTATTCTTGTTGCATGGATACTCAACTCTATGATTCATGGCTAGATTTGAATATCTATTTCCCTATTGGATTGCTTGAAACTACTAAAAATTTGGC
AACAATGTTTATAATTATACGATAATCCTGGTATGATGACATGCCTTAGAACTCTTAAGGTGATTGTAGGACTTGTTTGGCTTTACCTCATGGTGCGGCTATACCCTCCC
ATCTCATGTCTCCTACAACATTTAGCCACCAAGACATGTTTTCCTGGACATATTTGGTTTGCTCTTTAGAGACAAAAAGAACCAACAAATTCATTTCCGTTTCTCAGTTT
CTTAAAAAGAGTTCAAATGGGAGAGGAAGCCACAAGAGAATTAAGAATAAAATACATCAAAGAAACGAGCTGAACATGAGATAATCACCATTGTGTTCTTCTCAACCCCA
AGAAAGAAACAAAAAAGCAACTGTTAACTCAGGAACACTGAATTGGTGAGGATCCTTGAAATAATGGATCCTACAAACTCGAGAGTTCCCCGAAGTTCTTACCTAACCAA
AAGGAAAGCTAATTTCTTCAACAAAATAATGACATGAAATTCAAGTCTCTGGAGTTAGGTTATGGAACAGAGGGTGGTGGTCTGCAATCAAAAGATTAGCTATGAATCAC
AATGCCAGAAAAATTGTGTAAGAATTCGAACCAAAAGGCCGGGAACGAGAGCTCCCGAGTCTCTCAGTTCCTAAATTCAGCATGCACAGCCACTCCTTTGCTCGGTCTCC
ACAACGGTTTCGGGGATTCCTTGAAAATATATATCCTGTTCGTGTTCGTTGGCTAATGCAGTCTTGGCAATGCATAAGAAAGCAGCATCAACGTTGTAGTCTTCTTTAGC
CGATGTCTCGAAGTAAGGAATATTATCTTTTGAAGCACACCATTCCCTAGCTTTCTT

Protein sequence

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MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIVNVKKKSKKSLGRILLKGDNITLMMNTGK

Carg25824 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome