CuGenDBv2

Gene ID	Carg25857
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Genome location	Carg_Chr04:4704945..4705857
RNA-Seq Expression	Carg25857
Synteny	Carg25857
Gene Ontology terms	GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0030497 - fatty acid elongation (biological process) GO:0042761 - very long-chain fatty acid biosynthetic process (biological process) GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component) GO:0018812 - 3-hydroxyacyl-CoA dehydratase activity (molecular function) GO:0102158 - very-long-chain 3-hydroxyacyl-CoA dehydratase activity (molecular function) GO:0102343 - 3-hydroxy-arachidoyl-CoA dehydratase activity (molecular function) GO:0102344 - 3-hydroxy-behenoyl-CoA dehydratase activity (molecular function) GO:0102345 - 3-hydroxy-lignoceroyl-CoA dehydratase activity (molecular function)
InterPro domains	IPR007482 - Protein-tyrosine phosphatase-like, PTPLA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600692.1 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. sororia]

9.5e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

KAG7031329.1 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-27

100

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Query:  MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

XP_022942201.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata]

9.5e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

XP_022942935.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata]

9.5e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

XP_022975511.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cucurbita maxima]

9.5e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FPK4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

4.6e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

A0A6J1FQM5 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

4.6e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

A0A6J1FST0 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

4.6e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

A0A6J1IEF4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

4.6e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

A0A6J1IKY7 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

4.6e-23

88.71

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

SwissProt top hits

e value

%identity

Alignment

Q4W1W1 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1

9.9e-07

Show/hide

Query:  QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL
        +++G +S R+PNK+N SFDY Y  ++ +A Y+P  P +Y +ML QR K L
Subjt:  QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL

Q5ZEJ0 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B

2.6e-15

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
        I +   + + KY  RMPNKWNFSFD+ Y ++L LA+YVPGSPHM+ YML QR KAL+K+K
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK

Q7XSZ4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A

5.2e-16

63.33

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Query:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
        I +   + S KY  RMPNKWNFSFD+ Y ++L LAIYVPGSPHM+ YML QR KAL+K+K
Subjt:  IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK

Q8VZB2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2

3.4e-15

72.22

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Query:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Subjt:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

Q9QY80 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1

5.8e-07

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Query:  QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL
        ++SG +S R+PNK+N SFDY Y  ++ +A Y+P  P +Y +ML QR K L
Subjt:  QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL

Arabidopsis top hits

e value

%identity

Alignment

AT5G10480.1 Protein-tyrosine phosphatase-like, PTPLA

2.4e-16

72.22

Show/hide

Query:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Subjt:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

AT5G10480.2 Protein-tyrosine phosphatase-like, PTPLA

2.4e-16

72.22

Show/hide

Query:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Subjt:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA

2.4e-16

72.22

Show/hide

Query:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE
        S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Subjt:  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

Sequences

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CDS sequence

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ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAAT
CTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG

mRNA sequence

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ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAAT
CTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGG
GTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTT
TCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATT
GTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATAT
TCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTG
GTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGAT
TTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA

Protein sequence

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MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

Carg25857 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome