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Carg25872 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25872
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncullin-associated NEDD8-dissociated protein 1-like
Genome locationCarg_Chr04:4801345..4802522
RNA-Seq ExpressionCarg25872
SyntenyCarg25872
Gene Ontology termsGO:0009733 - response to auxin (biological process)
GO:0010051 - xylem and phloem pattern formation (biological process)
GO:0010228 - vegetative to reproductive phase transition of meristem (biological process)
GO:0010265 - SCF complex assembly (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (molecular function)
InterPro domainsIPR011989 - Armadillo-like helical
IPR039852 - Cullin-associated NEDD8-dissociated protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577353.1 Cullin-associated NEDD8-dissociated protein 1, partial [Cucurbita argyrosperma subsp. sororia]3.1e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
KAG7031343.1 Cullin-associated NEDD8-dissociated protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-53100Show/hide
Query:  MEDILKRGFAQPNILPETNPMLISNFESIKISYRGRILQYHIWAGCMSDLYDEMTHILGDLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIEVSSS
        MEDILKRGFAQPNILPETNPMLISNFESIKISYRGRILQYHIWAGCMSDLYDEMTHILGDLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIEVSSS
Subjt:  MEDILKRGFAQPNILPETNPMLISNFESIKISYRGRILQYHIWAGCMSDLYDEMTHILGDLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIEVSSS

Query:  STLNVEL
        STLNVEL
Subjt:  STLNVEL
XP_004133735.1 cullin-associated NEDD8-dissociated protein 1 [Cucumis sativus]3.1e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
XP_022942398.1 cullin-associated NEDD8-dissociated protein 1-like [Cucurbita moschata]3.1e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
XP_023530859.1 cullin-associated NEDD8-dissociated protein 1-like [Cucurbita pepo subsp. pepo]3.1e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
TrEMBL top hitse value%identityAlignment
A0A0A0L837 TIP120 domain-containing protein1.5e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
A0A6J1EU84 cullin-associated NEDD8-dissociated protein 11.5e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
A0A6J1FUQ7 cullin-associated NEDD8-dissociated protein 1-like1.5e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
A0A6J1IJ62 cullin-associated NEDD8-dissociated protein 1-like1.5e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
A0A6J1J9S5 cullin-associated NEDD8-dissociated protein 11.5e-10100Show/hide
Query:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
        DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Subjt:  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
SwissProt top hitse value%identityAlignment
Q8L5Y6 Cullin-associated NEDD8-dissociated protein 13.3e-1096.97Show/hide
Query:  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP
        LSSPVL+AVGERYYKVTAEALRVCGELVRVVRP
Subjt:  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP
Arabidopsis top hitse value%identityAlignment
AT2G02560.1 cullin-associated and neddylation dissociated2.3e-1196.97Show/hide
Query:  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP
        LSSPVL+AVGERYYKVTAEALRVCGELVRVVRP
Subjt:  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP
AT2G02560.2 cullin-associated and neddylation dissociated2.3e-1196.97Show/hide
Query:  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP
        LSSPVL+AVGERYYKVTAEALRVCGELVRVVRP
Subjt:  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACATCCTTAAGAGAGGTTTCGCCCAGCCAAATATCCTTCCCGAAACTAATCCTATGCTCATTTCCAACTTTGAATCTATCAAAATTTCGTACAGGGGGCGAAT
TTTGCAATACCACATCTGGGCTGGTTGTATGAGCGACCTTTATGATGAGATGACACACATCCTAGGGGATCTCTCTAGTCCTGTTTTATCTGCTGTTGGAGAGCGTTATT
ATAAGGTTACTGCTGAAGCATTGAGAGTATGTGGGGAACTTGTTCGGGTTGTTCGTCCTGGTATTGAGGTGAGTTCAAGTTCCACTTTAAATGTAGAACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACATCCTTAAGAGAGGTTTCGCCCAGCCAAATATCCTTCCCGAAACTAATCCTATGCTCATTTCCAACTTTGAATCTATCAAAATTTCGTACAGGGGGCGAAT
TTTGCAATACCACATCTGGGCTGGTTGTATGAGCGACCTTTATGATGAGATGACACACATCCTAGGGGATCTCTCTAGTCCTGTTTTATCTGCTGTTGGAGAGCGTTATT
ATAAGGTTACTGCTGAAGCATTGAGAGTATGTGGGGAACTTGTTCGGGTTGTTCGTCCTGGTATTGAGGTGAGTTCAAGTTCCACTTTAAATGTAGAACTGTAG
Protein sequenceShow/hide protein sequence
MEDILKRGFAQPNILPETNPMLISNFESIKISYRGRILQYHIWAGCMSDLYDEMTHILGDLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIEVSSSSTLNVEL