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Carg25877 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25877
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationCarg_Chr06:2343613..2345696
RNA-Seq ExpressionCarg25877
SyntenyCarg25877
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028115.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]4.9e-96100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEIYAQI
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEIYAQI
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEIYAQI

Query:  HLPSINYVSLLMGSSNPCLSDTQARHSLVRKLNLYRHLSWHAKSPMFLHVLLKLLRDPSLIRYKMLQALSFNYLETLSLNG
        HLPSINYVSLLMGSSNPCLSDTQARHSLVRKLNLYRHLSWHAKSPMFLHVLLKLLRDPSLIRYKMLQALSFNYLETLSLNG
Subjt:  HLPSINYVSLLMGSSNPCLSDTQARHSLVRKLNLYRHLSWHAKSPMFLHVLLKLLRDPSLIRYKMLQALSFNYLETLSLNG

XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]1.0e-3795.35Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]6.4e-40100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]6.0e-3896.51Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]3.2e-3998.84Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIY KSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B5.0e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1F9M2 replication protein A 14 kDa subunit B-like1.1e-3795.35Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1FQS1 replication protein A 14 kDa subunit B-like3.1e-40100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1J6J3 replication protein A 14 kDa subunit B-like5.0e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTD+NQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1L034 replication protein A 14 kDa subunit B-like3.1e-40100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B4.2e-2660.42Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTD+ QIVVKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD +   +L ++
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI

Q9LXK1 Replication protein A 14 kDa subunit A3.3e-2354.64Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTD+ QIVV+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD +   +L ++
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI

Q9SDK9 Replication protein A 14 kDa subunit2.8e-2251.69Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEP
        MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD  P
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEP

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein2.4e-2454.64Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTD+ QIVV+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD +   +L ++
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein2.4e-2454.64Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTD+ QIVV+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD +   +L ++
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein3.0e-2760.42Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTD+ QIVVKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD +   +L ++
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTTCAAACCCTTCAGTTTTTGTCAACGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCTGAAGGCAACGGAGTCAT
ATATGGTAAATCGACAGATAACAATCAGATTGTTGTGAAAGGCTCCCCACCCTTTCCCCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTTTGGACCAATTTTGGCGACTCATTCGACGATGAACCTCAGATAGATCTGCTTGAAATATATGCACAAATACATCTACCTTCAATAAACTATGTCAGCTTG
CTAATGGGGAGTTCAAACCCTTGTTTATCTGATACTCAAGCTAGACATTCTTTGGTAAGAAAGCTCAACCTCTACCGTCACCTCTCGTGGCACGCTAAGTCGCCGATGTT
TCTTCATGTTCTTCTGAAGCTTCTGAGAGATCCATCTCTCATACGGTATAAAATGCTTCAGGCATTATCCTTCAATTATCTAGAAACCTTAAGCTTAAATGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATCTCGTAACTTCAATTTTGCCGCTTTCAAAAGCCCGTGCTCTTTTTCTTCTCCGTCGATCGATTCGGTTTCCATTTTTGAGGAACTCTGCAATCGCTAAAATCAGATGG
ATACTTCAAACCCTTCAGTTTTTGTCAACGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCTGAAGGCAACGGAGTCATATAT
GGTAAATCGACAGATAACAATCAGATTGTTGTGAAAGGCTCCCCACCCTTTCCCCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACTGACAAATCCATACGAGC
TGATGTTTGGACCAATTTTGGCGACTCATTCGACGATGAACCTCAGATAGATCTGCTTGAAATATATGCACAAATACATCTACCTTCAATAAACTATGTCAGCTTGCTAA
TGGGGAGTTCAAACCCTTGTTTATCTGATACTCAAGCTAGACATTCTTTGGTAAGAAAGCTCAACCTCTACCGTCACCTCTCGTGGCACGCTAAGTCGCCGATGTTTCTT
CATGTTCTTCTGAAGCTTCTGAGAGATCCATCTCTCATACGGTATAAAATGCTTCAGGCATTATCCTTCAATTATCTAGAAACCTTAAGCTTAAATGGTTAG
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDDEPQIDLLEIYAQIHLPSINYVSL
LMGSSNPCLSDTQARHSLVRKLNLYRHLSWHAKSPMFLHVLLKLLRDPSLIRYKMLQALSFNYLETLSLNG