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Carg25892 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25892
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S17-like
Genome locationCarg_Chr06:2429652..2429900
RNA-Seq ExpressionCarg25892
SyntenyCarg25892
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001210 - Ribosomal protein S17e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028130.1 40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-36100Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

XP_022938121.1 40S ribosomal protein S17-like [Cucurbita moschata]2.0e-36100Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

XP_023005133.1 40S ribosomal protein S17-like [Cucurbita maxima]1.4e-3497.56Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVD TVPQQVAFGLGGRG RY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

XP_023539023.1 40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo]3.3e-3698.78Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPG+VQVDPTVPQQVAFGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

XP_038904935.1 40S ribosomal protein S17-like [Benincasa hispida]1.4e-3492.68Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVD+ETLDMLSALGM DIPG+VQVDPTVPQQV FGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

TrEMBL top hitse value%identityAlignment
A0A0A0LB02 40S ribosomal protein S171.2e-3493.9Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQVDPTVPQQV FGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

A0A1S3B6R7 40S ribosomal protein S17-like1.2e-3493.9Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQVDPTVPQQV FGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

A0A5A7TQK2 40S ribosomal protein S17-like1.2e-3493.9Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQVDPTVPQQV FGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

A0A6J1FC93 40S ribosomal protein S17-like9.5e-37100Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

A0A6J1L1C6 40S ribosomal protein S17-like6.8e-3597.56Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVD TVPQQVAFGLGGRG RY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY

SwissProt top hitse value%identityAlignment
P49205 40S ribosomal protein S17-11.5e-2371.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  VDP   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY

P49215 40S ribosomal protein S171.2e-2573.86Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAF------GLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD IEVD+ETLDMLSALGM+D+PG+V+     PQ VA       G GG GR+Y
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAF------GLGGRGRRY

Q9LZ17 40S ribosomal protein S17-41.8e-2471.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V+P   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY

Q9SJ36 40S ribosomal protein S17-22.0e-2369.88Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRG-RRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  V+P          GGR  RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRG-RRY

Q9SQZ1 40S ribosomal protein S17-32.4e-2179.69Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVD
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIK D ++VD+ETL+ML++LGM+DI GI QV+
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVD

Arabidopsis top hitse value%identityAlignment
AT2G04390.1 Ribosomal S17 family protein1.1e-2471.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  VDP   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY

AT5G04800.1 Ribosomal S17 family protein1.3e-2571.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V+P   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY

AT5G04800.2 Ribosomal S17 family protein1.3e-2571.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V+P   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY

AT5G04800.3 Ribosomal S17 family protein1.3e-2571.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V+P   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY

AT5G04800.4 Ribosomal S17 family protein1.3e-2571.43Show/hide
Query:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY
        MKRIQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V+P   +    AFG G   RRY
Subjt:  MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDP--TVPQQVAFGLGGRGRRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACCGA
TCAAATCGAGGTCGATAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGATAGTTCAGGTCGATCCGACTGTGCCACAGCAGGTTGCGTTCG
GATTGGGCGGTCGCGGTAGGAGGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACCGA
TCAAATCGAGGTCGATAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGATAGTTCAGGTCGATCCGACTGTGCCACAGCAGGTTGCGTTCG
GATTGGGCGGTCGCGGTAGGAGGTACTGA
Protein sequenceShow/hide protein sequence
MKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQVDPTVPQQVAFGLGGRGRRY