; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg25933 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25933
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA repair protein XRCC2 homolog
Genome locationCarg_Chr04:10917633..10918341
RNA-Seq ExpressionCarg25933
SyntenyCarg25933
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR013632 - DNA recombination and repair protein Rad51-like, C-terminal
IPR020588 - DNA recombination and repair protein RecA-like, ATP-binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601640.1 DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.9e-5690.55Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNGSG+     N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

KAG7032399.1 DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperma]1.5e-76100Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRLSPRAEILLNDICNVSGHF
        KLRILEGNGSGELFVPFNIDNIFTSRLSPRAEILLNDICNVSGHF
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRLSPRAEILLNDICNVSGHF

XP_022957215.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata]5.7e-5588.98Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNGSG+     N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

XP_023550059.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]3.9e-5689.76Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNG+G+L    N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

XP_023550300.1 DNA repair protein XRCC2 homolog isoform X3 [Cucurbita pepo subsp. pepo]3.9e-5689.76Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNG+G+L    N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

TrEMBL top hitse value%identityAlignment
A0A6J1DLP4 DNA repair protein XRCC2 homolog8.6e-4987.39Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MAL QWI GDETAAEML RVLK+R SL VPPLHR+PL  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNG+RYGGLECSVVFIDLDCRLD+SRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSG
        KLRILE NG+G
Subjt:  KLRILEGNGSG

A0A6J1GYJ6 DNA repair protein XRCC2 homolog isoform X32.8e-5588.98Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNGSG+     N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

A0A6J1GZX5 DNA repair protein XRCC2 homolog isoform X12.8e-5588.98Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNGSG+     N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

A0A6J1KC54 DNA repair protein XRCC2 homolog isoform X12.8e-5588.19Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDE+AAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNG+G+     N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

A0A6J1KC81 DNA repair protein XRCC2 homolog isoform X32.8e-5588.19Show/hide
Query:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL
        MALRQWIDGDE+AAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVL
Subjt:  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVL

Query:  KLRILEGNGSGELFVPFNIDNIFTSRL
        KLRILEGNG+G+     N D ++T+ L
Subjt:  KLRILEGNGSGELFVPFNIDNIFTSRL

SwissProt top hitse value%identityAlignment
O43543 DNA repair protein XRCC22.9e-0934.62Show/hide
Query:  ETAAEMLTRVLKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRIL
        E+  E+L R L+ R+SL  + P L      P+H G+++E  GP G+ KT++L      CILPK       GGLE  V+FID D   D+ RL  +L+ R+ 
Subjt:  ETAAEMLTRVLKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRIL

Query:  EGNGSGELFVPFNIDNIFTSRLSPRAEILL
        +   S E  + + +   F    S    +LL
Subjt:  EGNGSGELFVPFNIDNIFTSRLSPRAEILL

Q682D3 DNA repair protein XRCC2 homolog3.3e-3767.59Show/hide
Query:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR
        R WI GDETA +ML+RVLK+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++CILPK WNGI YGGL   V+F+DLDCR D+ RL+Q+LK R
Subjt:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR

Query:  ILEGNGSG
        +L+ N  G
Subjt:  ILEGNGSG

Q97BJ9 DNA repair and recombination protein RadA4.7e-0438.46Show/hide
Query:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILE
        + E  G  GS KTQI+ Q AVNC +PKE      GG +  V+ ID +      R+ Q+ K + L+
Subjt:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILE

Q9CX47 DNA repair protein XRCC28.4e-0935.38Show/hide
Query:  ETAAEMLTRVLKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRIL
        E+  E+L R L+ R+SL  L P L      P+H G++ E  GP G+ KT++L      CILPK       GGL+  V+FID D   D+ RL  VL+ R+ 
Subjt:  ETAAEMLTRVLKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRIL

Query:  EGNGSGELFVPFNIDNIFTSRLSPRAEILL
        +   S E  +   +  +F +  S   ++LL
Subjt:  EGNGSGELFVPFNIDNIFTSRLSPRAEILL

Q9HJ68 DNA repair and recombination protein RadA3.6e-0441.67Show/hide
Query:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLK
        + E  G  GS KTQI+ Q AVNC LPKE      GG +  V+ ID +      R+ Q+ K
Subjt:  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLK

Arabidopsis top hitse value%identityAlignment
AT2G28560.1 DNA repair (Rad51) family protein2.2e-0426.61Show/hide
Query:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL--------AQVLKLRILEGNGSGELFV--PFNIDNIFTSRLSP
        G + ELVGP G  K+Q  ++ A++   P     + YGGL+  V++ID++ +    R+         +V  L+ +    +G + V  P ++ N   S    
Subjt:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL--------AQVLKLRILEGNGSGELFV--PFNIDNIFTSRLSP

Query:  RAEILLNDI
        +  IL N +
Subjt:  RAEILLNDI

AT2G28560.2 DNA repair (Rad51) family protein2.2e-0426.61Show/hide
Query:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL--------AQVLKLRILEGNGSGELFV--PFNIDNIFTSRLSP
        G + ELVGP G  K+Q  ++ A++   P     + YGGL+  V++ID++ +    R+         +V  L+ +    +G + V  P ++ N   S    
Subjt:  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL--------AQVLKLRILEGNGSGELFV--PFNIDNIFTSRLSP

Query:  RAEILLNDI
        +  IL N +
Subjt:  RAEILLNDI

AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)2.3e-3867.59Show/hide
Query:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR
        R WI GDETA +ML+RVLK+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++CILPK WNGI YGGL   V+F+DLDCR D+ RL+Q+LK R
Subjt:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR

Query:  ILEGNGSG
        +L+ N  G
Subjt:  ILEGNGSG

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)2.3e-3867.59Show/hide
Query:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR
        R WI GDETA +ML+RVLK+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++CILPK WNGI YGGL   V+F+DLDCR D+ RL+Q+LK R
Subjt:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR

Query:  ILEGNGSG
        +L+ N  G
Subjt:  ILEGNGSG

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)2.3e-3867.59Show/hide
Query:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR
        R WI GDETA +ML+RVLK+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++CILPK WNGI YGGL   V+F+DLDCR D+ RL+Q+LK R
Subjt:  RQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR

Query:  ILEGNGSG
        +L+ N  G
Subjt:  ILEGNGSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTCACTAGAGTCCTCAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCT
CCACGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCC
GCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTGCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGC
GGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCTTAATGATATCTGTAATGTCTCGGGTCATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ACTGTCGCAGAGTTCCGGCCAAATAAGGGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTCACTAGAGTCCTCAAAGAGCGAAC
CTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAG
TTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTGCCCAA
GTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCT
TAATGATATCTGTAATGTCTCGGGTCATTTCTAGGATTTATTGCGTCTTTGAGTTATTAATCTGTACATATGCTTCTGTTATACATTTGATATAGAGCTAGTCTTGATGA
TTGCTATTCTGCT
Protein sequenceShow/hide protein sequence
MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGS
GELFVPFNIDNIFTSRLSPRAEILLNDICNVSGHF