CuGenDBv2

Gene ID	Carg25948
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Squalene synthase
Genome location	Carg_Chr20:3986654..3992882
RNA-Seq Expression	Carg25948
Synteny	Carg25948
Gene Ontology terms	GO:0008610 - lipid biosynthetic process (biological process) GO:0045338 - farnesyl diphosphate metabolic process (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0004310 - farnesyl-diphosphate farnesyltransferase activity (molecular function) GO:0051996 - squalene synthase activity (molecular function)
InterPro domains	IPR002060 - Squalene/phytoene synthase IPR006449 - Squalene synthase-like IPR008949 - Isoprenoid synthase domain superfamily IPR019845 - Squalene/phytoene synthase, conserved site IPR033904 - Trans-isoprenyl diphosphate synthases, head-to-head IPR044844 - Trans-isoprenyl diphosphate synthases, eukaryotic-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571079.1 Squalene synthase 1, partial [Cucurbita argyrosperma subsp. sororia]

6.3e-155

88.27

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY
        AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR ++ V    M    +P AI                       
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY

Query:  QLTNQYERQSPGTSFNRTHREHGQ
         LTNQYERQSPGTSFNRTHREHGQ
Subjt:  QLTNQYERQSPGTSFNRTHREHGQ

KAG7010894.1 hypothetical protein SDJN02_27692 [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-184

100

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY
        AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDY

Query:  QLTNQYERQSPGTSFNRTHREHGQ
        QLTNQYERQSPGTSFNRTHREHGQ
Subjt:  QLTNQYERQSPGTSFNRTHREHGQ

XP_022943419.1 squalene synthase-like isoform X1 [Cucurbita moschata]

1.3e-144

90.75

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS
        AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR ++ V    M    +P AI +  S      A  S
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS

XP_022943420.1 squalene synthase-like isoform X2 [Cucurbita moschata]

1.6e-145

93.26

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS
        AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS

XP_022986545.1 squalene synthase-like isoform X2 [Cucurbita maxima]

1.1e-143

92.2

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS
        AKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS

TrEMBL top hits

e value

%identity

Alignment

A0A2R2WEW6 Squalene synthase

4.7e-140

94.68

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFICKEVETV+DYDEYCHYVAGLVGLGLSKLFHASK EDLAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLALCYNNV VFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFV
        AKVI RTKTMADVYGAFFDFSVMLKAKVN+SDPNASKTL+RIEAIQKTCKQSGLLNKR ++ V
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFV

A0A6J1FU93 Squalene synthase

6.4e-145

90.75

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS
        AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR ++ V    M    +P AI +  S      A  S
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS

A0A6J1FXS8 Squalene synthase

7.6e-146

93.26

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS
        AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS

A0A6J1JEC3 Squalene synthase

5.4e-144

92.2

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS
        AKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS

A0A6J1JGC1 Squalene synthase

2.1e-143

90.07

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPREIWSKYADKLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS
        AKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+RIEAIQKTCKQSGLLNKR ++ V    M    +P AI L  S      A  S
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS

SwissProt top hits

e value

%identity

Alignment

A0A1P7Y0C9 Squalene synthase 8

2.2e-126

82.44

Show/hide

Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVS AFL+LG  Y+EAIEDIT RMGAGMAKFICKEVET++DYDEYCHYVAGLVGLGLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPR+IWSKY DKLED KYE+NS KAVQCLND+VT+AL H EDCL+YMS+L+  +IFRFCAIPQIMAIGTLALC+NN  VFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFF
        AKVI +TKTM+DVYGAFFDFS +LK+KV+++DPNA+KTL+R+EAIQKTCK+SG L+KRF  F
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFF

C9E894 Squalene synthase 2

2.2e-126

76.63

Show/hide

Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVS AFL+LG GY+EAIEDIT RMGAGMAKFICKEVET++DYDEYCHYVAGLVGLGLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPR+IWSKY DKLED KYE+NS KAVQCLND+VTNAL HVEDCL+YMS+L+D +IFRFCAIPQIM+IGTLALCYNN+ VFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQ-LRLSYFSAYYAS
        AKVI RT TM+DVYGAFFDFS MLK+KV+++DPNA+KTL+R+EAIQK CK SG L  +   +++ N   Y  +   I  + L+   AY +S
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQ-LRLSYFSAYYAS

D0VFU8 Squalene synthase

9.9e-127

82.51

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MD+FHHVSTAFLELG+ YQ+AIEDIT RMGAGMAKFICKEVET +DYDEYCHYVAGLVGLGLSKLFHAS  EDLA DSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NE+PK RMFWPREIWSKY +KLED KYE+NSVKAVQCLND+VTNAL+HVEDCL YM NL D +IFRFCAIPQ+MAIGTLA+CY+N++VFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFV
        AKVI RTKTMADVYGAFFDFS MLK+KVN++DPNA+KTL R++AI KTC+ SG LNKR  + +
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFV

D2K762 Squalene synthase 3

1.1e-125

81.2

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVS AFL+LG  Y+EAIEDIT RMGAGMAKFICKEVET++DYDEYCHYVAGLVGLGLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPR+IWSKY DKLED KYE+NS KAVQCLND+VTNAL HVEDCL+YMS+L+D +IFRFCAIPQIMAIGTLALCYNN+ VFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGN
        AKVI RT TM+DVYG FFDFS MLK+KV+++DPNA+KTL+R+EAIQK CK SG L  +   +++ N
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGN

O48666 Squalene synthase 1

7.6e-127

75.59

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI
        MDEFHHVS AFLELG GYQEAIEDIT RMGAGMAKFICKEVET+ DYDEYCHYVAGLVGLGLSKLFHAS +EDLA DSLSNSMGLFLQKTNIIRDYLEDI
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDI

Query:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT
        NEIPKSRMFWPR+IWSKY DKLED KYE+NS KAVQCLND+VT+AL H EDCL+YMS+L+  +IFRFCAIPQIMAIGTLALC+NN  VFRGVVKMRRGLT
Subjt:  NEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLT

Query:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLIS
        AKVI +TKTM+DVYGAFFDFS +LK+KV+++DPNA+KTL+R+EAIQKTCK+SG L+KR  + +             I + L+   AY +S  L++
Subjt:  AKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLIS

Arabidopsis top hits

e value

%identity

Alignment

AT4G34640.1 squalene synthase 1

2.9e-121

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLE
        MD+FHHVS AFLEL +GYQEAIE+IT+RMGAGMAKFIC+EVETV+DYDEYCHYVAGLVGLGLSKLF A+ SE L PD  ++SNSMGLFLQKTNIIRDYLE
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLE

Query:  DINEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRG
        DINEIPKSRMFWPREIW KYADKLED KYE+N+ K+VQCLN++VTNAL H+EDCL+YM +L+D SIFRFCAIPQIMAIGTLALCYNN  VFRGVVK+RRG
Subjt:  DINEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRG

Query:  LTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR
        LTAKVI RTKTMADVYGAF+DFS MLK KV+ +DPNASKTL R+EA+QK C+ +G+L  R
Subjt:  LTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR

AT4G34650.1 squalene synthase 2

2.9e-113

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Query:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLE
        MD+FHHVS AFL+L +GYQEAIEDITKRMGAGMAKFICKEVET++DYDEYCHY AGLVGLGLSK+F AS+ E L PD   +SNS GLFLQKTNII+DYLE
Subjt:  MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLE

Query:  DINEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRG
        DINE PKSRMFWPREIW KY DKLEDFK E+ + KAVQCLN++VTNAL HVEDCL+ +++L+D +IF+ CAIPQI+AIGTLALCYNNV VFRGVV++RRG
Subjt:  DINEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRG

Query:  LTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR
        L AKVI RTKTM DVYGAF+DFS ML+ KV+++DPNA KTL R+E I+K CK++G L+KR
Subjt:  LTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCAT
TTGCAAAGAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACT
TGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGG
CCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGAC
CCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCAATTGGAACACTAGCATTATGCTACA
ACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTT
TCTGTTATGCTGAAGGCTAAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAA
GAGGTTCGTATTTTTCGTCCTCGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTA
TCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAA

mRNA sequence

Show/hide mRNA sequence

GAACGGATCCTCCCTTTTTATTTTGTTCTTGGCGAGGATCACAACAAACACTTCGGTCAGAGATTAAAGCAAGAAACAATGAGCCAAAGTTTTCTTTTAAAATTTCCCTC
TTAAAAAATTCGGGTCGTCTTCTTCAAGTAGCTGGAGTCCACCCTTGATTCAGTTACCAGTCATTTGGGGTTGAATTAATCGGTTTCTTTGATTGAAGAAGAGGATCTCC
ATTTGAAGAATCGGGGATTTCTTCTACGGCTTGATCGGCGAGAGATCTGAAGCTCTGTGGATTCTTGGTGCTTTGAAATGGGGAGTTTGGGGGCGATTTTGAGACATCCA
GATGACATTTACCCGCTTCTGAAACTGAAAATGGCTGCTAGACATGCGGAGAAGCAGATCCCGCCGGAGTCTCATTGGGGATTCTGCTACACCATGTTGCATAAGGTCTC
AAGAAGTTTTGCTCTCGTTATTCAACAGCTTAAGCCCGAGCTTCGGAATGCTGTATGCATATTCTATCTTGTTCTTCGTGCCCTCGACACTGTTGGTATGTAATGAACTC
GTACTTCTTTGAGAAGTTTAATGGTTTTTTCTCCTGTAATAATGACTATAATGGCATTTTGGTGGCTTTATATTGCGTTTGACTAACCTTCTTTTTATATATCTCATGTT
ATCTTAGTCCTACCGAATGAACTTAAGTTCGTTATCCTAAGTTTGTAACCTAGCCCGGCTAAGATGAGAGGTAAGGTCAATTTGACTCGAATCCTGTACCTGATCTTTAA
TCCTACACCAGTTAATGATGGGGAGAAGTTTCTCTCTTTATCATTTTTTCATCAATGTTGGCCCAGTGCTCGTCCATGCCCAATCCTAATGGACAAACCTTCGATCTGAT
TTGTCCCTAGCTCTATAATCCAGCCGTCTTCCTTAGTCCCATCAAGCCCTCCTCTCCAAGGCCTTGCCCTCTTTCTCAACTCAAGTCTTTCTCACTTGGGTACTCATAAT
CTTCATAGTTGGCAATTCAATTGAAGACGATCAATCCCATCTTAATATGTTAATCGAGAAAAACTCGTTATCTTTTTTCTAATTATATAGTTACATATGTATGTACGAAG
AACATGTCGAAATTCATGCTGGTTTCTTTTTTATTTGGATTAGCCTAATGGTCCTAAAATTTATTTTATCTTTACAGAGGATGACACAAGCATACAAACAGATATCAAAG
TACCAATTCTGAAAGCTTTTCACTGTCAGATATATAACCGTGATTGGCATTTTTCATGTGGCACAAAGGACTATAAAGTTCTTATGGATGAGTTTCATCACGTTTCAACT
GCGTTCCTAGAACTCGGGAGAGGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTAGAGACAGTTGAAGA
TTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTA
TGGGATTGTTTCTTCAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCT
GATAAACTAGAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACAT
GTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCG
TCAAAATGCGTCGGGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTCAAC
AGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGGAA
TTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAA
CCAACCAGTATGAACGTCAAAGTCCGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAAGTTTCAGTTTGTAGCTCAATTATTGTCTGAGTTTTGTTTGAA
TATTACAATGGCTGTAAGTTAGTGTTTGTTTAGTACAGAGCATGAAACAAGTGAAATTCTGTAACCTTCTAATTCTTCTTTTTCAATCTTCTAATAAGAGATTACGTCTT
GGAATTATAATTTCTTCACAAATGGTGTTTCAGTACCCTGTGGATTGTTTATTTGTGTTTTTTTTTTTTTTTCCCAGAAAAAAAATT

Protein sequence

Show/hide protein sequence

MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFW
PREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDF
SVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDYQLTNQYERQSPGTSFNRTHREHGQ

Carg25948 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome