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Carg25962 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25962
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAuxin-responsive protein
Genome locationCarg_Chr20:3920385..3920831
RNA-Seq ExpressionCarg25962
SyntenyCarg25962
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147056.1 auxin-induced protein X10A [Cucumis sativus]9.2e-6181.21Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MS   +KS+KIR IVRLRQMLQHWRKKARAAA  APP DVPA H+AVCVG+GCRRFIVR +FLNHPIF KLLSQAEEEYGF TRGPLALPCDESVFEEV+
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS
        RV+A SEL+NSSR+S+LKDL RRCD+DVR KNLE+LGESRPLLYGF+D+
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS

XP_022943918.1 auxin-responsive protein SAUR50-like [Cucurbita moschata]7.8e-76100Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
        RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS

XP_022986631.1 auxin-responsive protein SAUR50-like [Cucurbita maxima]1.3e-7599.32Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
        RVIARSELNNSSRSSS+KDLQRRCDKDVRKNLEYLGESRPLLYGFADS
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS

XP_023512602.1 auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]3.3e-7497.97Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MSSV+AKSNKIRSIVRLRQMLQHWRKKARAAASRAPP DVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
        RVIARSELNNSSRSSS+KDLQRRCDKDVRKNLEYLGESRPLLYGFADS
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS

XP_038902037.1 auxin-responsive protein SAUR71-like [Benincasa hispida]1.1e-6486.58Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MS   +KSNKIR IVRLRQMLQHWRKKARAAA RAPP DVPA HVAVCVGSGCRRFIVRA+FLNHPIFRKLLSQAEEEYGF TRGPLALPCDESVFEEV+
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS
        RV+ARSEL+NSSR+S+LKDLQRRCD+DVR KNLE+LGESRPLLYGF+D+
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS

TrEMBL top hitse value%identityAlignment
A0A0A0LM48 Uncharacterized protein4.5e-6181.21Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MS   +KS+KIR IVRLRQMLQHWRKKARAAA  APP DVPA H+AVCVG+GCRRFIVR +FLNHPIF KLLSQAEEEYGF TRGPLALPCDESVFEEV+
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS
        RV+A SEL+NSSR+S+LKDL RRCD+DVR KNLE+LGESRPLLYGF+D+
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS

A0A1S3C5H3 auxin-responsive protein SAUR645.8e-6180.54Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MS   +KS+KIR IVRLRQMLQHWRKKAR AASRAPP DVPA H+AVCVG+GCRRFIV  +FLNHPIFR+LLSQAEEEYGF TRGPLALPCDESVFEEV+
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS
        RV+ARSEL+N+SR+S+LKDL RRCD+DVR KNLE+LGES PLLYGF+D+
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS

A0A5A7TQK8 Auxin-responsive protein SAUR645.8e-6180.54Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MS   +KS+KIR IVRLRQMLQHWRKKAR AASRAPP DVPA H+AVCVG+GCRRFIV  +FLNHPIFR+LLSQAEEEYGF TRGPLALPCDESVFEEV+
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS
        RV+ARSEL+N+SR+S+LKDL RRCD+DVR KNLE+LGES PLLYGF+D+
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVR-KNLEYLGESRPLLYGFADS

A0A6J1FXH8 auxin-responsive protein SAUR50-like3.8e-76100Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
        RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS

A0A6J1JBR0 auxin-responsive protein SAUR50-like6.4e-7699.32Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Query:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS
        RVIARSELNNSSRSSS+KDLQRRCDKDVRKNLEYLGESRPLLYGFADS
Subjt:  RVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS

SwissProt top hitse value%identityAlignment
O64538 Auxin-responsive protein SAUR402.0e-1039.08Show/hide
Query:  KKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSS
        K+A  A+S      VP+ HV V VG    RF+V A  LNHP+F  LL+++ +EYG+  +G L +PC+  VFE+V+  +     +++S
Subjt:  KKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSS

O65695 Auxin-responsive protein SAUR502.4e-1138.1Show/hide
Query:  SVMAKSNKIRSIVRLRQMLQH----WRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEE
        ++M K++K+     L+Q+L+      +K          P DVP  H  V VG    R+IV  SFL HP F+ LL +AEEE+GF     L +PCDE VF+ 
Subjt:  SVMAKSNKIRSIVRLRQMLQH----WRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEE

Query:  VIRVI
        +  +I
Subjt:  VIRVI

Q9LTV3 Auxin-responsive protein SAUR727.7e-1042.65Show/hide
Query:  SRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        S+     VP  HV V VG    RF+V A  LNHP+F  LL+++ +EYG+  +G L +PC   VFE ++
Subjt:  SRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Q9SA49 Auxin-responsive protein SAUR413.1e-1137.76Show/hide
Query:  LRQMLQHWRKKARAAASRAPPP-----------DVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI
        +R+    +R +       APPP            VPA HV V VG    RF+V A  +NHPIF  LL+++ +EYG+A +G L +PC   VFE V+  +
Subjt:  LRQMLQHWRKKARAAASRAPPP-----------DVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI

Q9SGU2 Auxin-responsive protein SAUR713.5e-1047.54Show/hide
Query:  VPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI
        VP  HV V VG    RF+V A  LNHP+F  LL Q+ +EYG+  +G L +PC   VFE ++
Subjt:  VPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVI

Arabidopsis top hitse value%identityAlignment
AT1G19840.1 SAUR-like auxin-responsive protein family2.7e-4258.67Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKAR-AAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEV
        M+  + K +KIR IVRLRQML+ WR KAR ++ SR  P DVP+ HVAVCVGSGCRRF+VRAS+LNHPI   LL QAEEE+GFA +GPL +PC+ESVFEE 
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKAR-AAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEV

Query:  IRVIARSELNNSSRSSSLKDLQRRCDK--DVRKNLEYLGESRPLLYGFAD
        IR I+RS+ + SSR +   DLQ +C+    ++  L+ + ESRPLL+G A+
Subjt:  IRVIARSELNNSSRSSSLKDLQRRCDK--DVRKNLEYLGESRPLLYGFAD

AT1G75590.1 SAUR-like auxin-responsive protein family1.8e-3854Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAA--SRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEE
        M+  + K +KIR IVRLRQML+ WR +AR ++  SR  P DVP+ HVAV VGS CRRF+VRA++LNHP+ R LL QAEEE+GF  +GPL +PC+ESVFEE
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAA--SRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEE

Query:  VIRVIARSELNNSSRSSSLKDLQRRCD-KDVRKNLEYLGESRPLLYGFAD
         IR I+RS+   S R +   D Q+ C    +R  L+   ESRPLL+G  +
Subjt:  VIRVIARSELNNSSRSSSLKDLQRRCD-KDVRKNLEYLGESRPLLYGFAD

AT4G34750.1 SAUR-like auxin-responsive protein family4.2e-3553.02Show/hide
Query:  MAKSNKIRSIVRLRQMLQHWRKKARAAASRAPP-PDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI
        M K+NKI S+VR+RQML+ W+KKA   +S   P  DVP  HVAV VG   RR++VRA  LNHPIFR+LL++AEEEYGFA  GPLA+PCDES+FE++I ++
Subjt:  MAKSNKIRSIVRLRQMLQHWRKKARAAASRAPP-PDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI

Query:  ARSELNNSS-----RSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD
         R E ++SS      +++L+DL+R     + KN     ESRPLL G A+
Subjt:  ARSELNNSS-----RSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD

AT4G34750.2 SAUR-like auxin-responsive protein family4.2e-3553.02Show/hide
Query:  MAKSNKIRSIVRLRQMLQHWRKKARAAASRAPP-PDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI
        M K+NKI S+VR+RQML+ W+KKA   +S   P  DVP  HVAV VG   RR++VRA  LNHPIFR+LL++AEEEYGFA  GPLA+PCDES+FE++I ++
Subjt:  MAKSNKIRSIVRLRQMLQHWRKKARAAASRAPP-PDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI

Query:  ARSELNNSS-----RSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD
         R E ++SS      +++L+DL+R     + KN     ESRPLL G A+
Subjt:  ARSELNNSS-----RSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD

AT5G10990.1 SAUR-like auxin-responsive protein family1.1e-3552.7Show/hide
Query:  MSSVMAKSNKIRSIVRLRQMLQHWRKKAR-AAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEV
        M+  + K +KIR IV+LRQML+ WR KAR ++  R+ P DVP+ HVAV VG  CRRF+V A++LNHPI   LL +AEEE+GFA +GPL +PC+ESVFEE 
Subjt:  MSSVMAKSNKIRSIVRLRQMLQHWRKKAR-AAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEV

Query:  IRVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD
        IR I R     SSR +   DL++     +R  L+ L ESRPLL+G ++
Subjt:  IRVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGGAAGAAGGCACGTGCAGCGGCCTCCAGAGCACCGCC
GCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGTGGCTGTCGGCGATTCATTGTCCGTGCGTCGTTCCTGAACCATCCGATCTTCCGGAAGTTGCTCTCAC
AGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTTTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAAC
TCGTCGCGAAGTTCGAGTCTCAAGGATTTGCAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGA
TAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGGAAGAAGGCACGTGCAGCGGCCTCCAGAGCACCGCC
GCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGTGGCTGTCGGCGATTCATTGTCCGTGCGTCGTTCCTGAACCATCCGATCTTCCGGAAGTTGCTCTCAC
AGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTTTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAAC
TCGTCGCGAAGTTCGAGTCTCAAGGATTTGCAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGA
TAGTTGA
Protein sequenceShow/hide protein sequence
MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNN
SSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS