CuGenDBv2

Gene ID	Carg25966
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S12
Genome location	Carg_Chr20:3876545..3877728
RNA-Seq Expression	Carg25966
Synteny	Carg25966
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000530 - Ribosomal protein S12e IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR029064 - 50S ribosomal protein L30e-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571063.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

KAG7010877.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

XP_022944351.1 40S ribosomal protein S12-like [Cucurbita moschata]

2.6e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

XP_022986724.1 40S ribosomal protein S12-like [Cucurbita maxima]

2.6e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

XP_023512603.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]

2.6e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BJY5 40S ribosomal protein S12

2.8e-61

99.17

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSS+
Subjt:  KDFGEDHEALHIVQKHVSSS

A0A6J1FU69 40S ribosomal protein S12

1.2e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

A0A6J1GQC3 40S ribosomal protein S12

2.8e-61

99.17

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSS+
Subjt:  KDFGEDHEALHIVQKHVSSS

A0A6J1JGV5 40S ribosomal protein S12

1.2e-61

100

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSSS
Subjt:  KDFGEDHEALHIVQKHVSSS

A0A6J1JWC7 40S ribosomal protein S12

2.8e-61

99.17

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGEDHEALHIVQKHVSS+
Subjt:  KDFGEDHEALHIVQKHVSSS

SwissProt top hits

e value

%identity

Alignment

P84175 40S ribosomal protein S12

1.3e-36

59.48

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKH
        KD+G++ +A  +++++
Subjt:  KDFGEDHEALHIVQKH

Q76I81 40S ribosomal protein S12

1.3e-36

59.48

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+ALCAEH +NL+ V   K LGEW GLCKID EGK RKVVGCSCVVV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKH
        KD+G++ +A  +++++
Subjt:  KDFGEDHEALHIVQKH

Q9S9P1 40S ribosomal protein S12-1

5.8e-48

77.31

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSS
        KDFGE+  AL IV KH++S
Subjt:  KDFGEDHEALHIVQKHVSS

Q9SKZ3 40S ribosomal protein S12-2

8.1e-50

76.67

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGE+  AL+IV+KH+ S+
Subjt:  KDFGEDHEALHIVQKHVSSS

Q9XHS0 40S ribosomal protein S12

4.3e-51

79.83

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSS
        KD+GE+ E L+IVQ++V S
Subjt:  KDFGEDHEALHIVQKHVSS

Arabidopsis top hits

e value

%identity

Alignment

AT1G15930.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.1e-49

77.31

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSS
        KDFGE+  AL IV KH++S
Subjt:  KDFGEDHEALHIVQKHVSS

AT1G15930.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.1e-49

77.31

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Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VV
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSS
        KDFGE+  AL IV KH++S
Subjt:  KDFGEDHEALHIVQKHVSS

AT2G32060.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

5.7e-51

76.67

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGE+  AL+IV+KH+ S+
Subjt:  KDFGEDHEALHIVQKHVSSS

AT2G32060.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

5.7e-51

76.67

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGE+  AL+IV+KH+ S+
Subjt:  KDFGEDHEALHIVQKHVSSS

AT2G32060.3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

5.7e-51

76.67

Show/hide

Query:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV
        MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+
Subjt:  MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVV

Query:  KDFGEDHEALHIVQKHVSSS
        KDFGE+  AL+IV+KH+ S+
Subjt:  KDFGEDHEALHIVQKHVSSS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATGGTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCA
GCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTCAAGGCACTTTGTGCGGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCC
TTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGACTTTGGGGAGGATCACGAGGCACTT
CACATTGTCCAGAAGCACGTGAGTTCAAGTTGA

mRNA sequence

Show/hide mRNA sequence

ATGCAGTGATGAAGGTGCAGTTCTTGTTGAGGCTCCTGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTTTGCAGCTTGTTCTTAGAAAATCATTAGCTCATG
GTGGGCTTGTTCGAGGCCTACATGAGAGTGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTCTGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTACGTTAAACTAGTC
AAGGCACTTTGTGCGGAGCACAATGTGAACTTGATGACAGTTCCAAGTGCAAAGACCCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAA
GGTCGTCGGGTGCTCATGCGTTGTTGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTATTACAATGGTGTTTGT
TGGTGTCAGTAAGAAAGTTTTTGATCTTTAGTTATGCTTAGGTTGGTTCCCTGTTGCTGCTGAACACGTTTTTACCCTATAATGTTTTTCTTTGTTCATTGATTGGAAAG
ATTTTTGGCAAACAGAACACAATTTATTTATGAAGAGAGTCTCCTTGCCAAGGGTAAAAGGGAATTGATTTTTTTTTATCATCTATTTACTAGTTATTAAGATCTACCTA
TTTCTGTTCTTTATGGAGGATAATGCAAGTCTTCCTTAGTTCTTTTCCT

Protein sequence

Show/hide protein sequence

MDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEAL
HIVQKHVSSS

Carg25966 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome