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Carg25971 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25971
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine/arginine-rich SC35-like splicing factor SCL30A isoform X1
Genome locationCarg_Chr11:4644415..4644971
RNA-Seq ExpressionCarg25971
SyntenyCarg25971
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055935.1 serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo var. makuwa]2.6e-1259.09Show/hide
Query:  MIVEDLLHGILVLL------LNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPH
        MI EDLL GILV L      LN + G+L HQLHAMQGLGL VMIMH  HQ+KG T D  P   V D  VERG +HD +AV   TPD H
Subjt:  MIVEDLLHGILVLL------LNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPH

KAG7022151.1 hypothetical protein SDJN02_15880, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-52100Show/hide
Query:  MIVEDLLHGILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRVQHH
        MIVEDLLHGILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRVQHH
Subjt:  MIVEDLLHGILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRVQHH

Query:  GAEVEVQAL
        GAEVEVQAL
Subjt:  GAEVEVQAL

KAG7023811.1 hypothetical protein SDJN02_14837, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-2060.53Show/hide
Query:  MIVEDLLHG------ILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVE
        MI EDLLHG      ILV  L+AMQG+L H LHAMQG G AVM MHP HQ++  T D  P L   DGIVERG +HDS AVVGH+PD  + +V+EVEV+V+
Subjt:  MIVEDLLHG------ILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVE

Query:  VRVQHHGAEVEVQA
             HGAEVEVQA
Subjt:  VRVQHHGAEVEVQA

XP_011660179.1 uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus]2.5e-1555.36Show/hide
Query:  MIVEDLLH---GILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRV
        MI ED LH    I V  LN + G+L HQ HAMQGLG   MIMHP HQ+KG T D +P   V D  VERG +HD +AV GHTPD H  +VQ V V+V+   
Subjt:  MIVEDLLH---GILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRV

Query:  QHHGAEVEVQAL
          H  EVEVQAL
Subjt:  QHHGAEVEVQAL

TrEMBL top hitse value%identityAlignment
A0A5A7UQN8 Serine/arginine-rich SC35-like splicing factor SCL30A isoform X11.3e-1259.09Show/hide
Query:  MIVEDLLHGILVLL------LNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPH
        MI EDLL GILV L      LN + G+L HQLHAMQGLGL VMIMH  HQ+KG T D  P   V D  VERG +HD +AV   TPD H
Subjt:  MIVEDLLHGILVLL------LNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTAGAAGATCTCCTCCACGGTATTCTCGTTCTCCTCCTCAACGCCATGCAAGGCGTTCTTTTTCACCAGCTCCACGCCATGCAAGGTCTCGGTCTCGCAGTTAT
GATTATGCATCCCCCCCACCAAGACAAAGGGCGTACTCCAGATCCATATCCCCGTCTCCACGTGGCAGACGGGATAGTCGAGAGAGGTCCTACCCACGACAGCCAAGCCG
TGGTAGGTCATACTCCCGATCCCCACAACTTGGTAGTGCAAGAAGTAGAAGTAGAAGTAGAAGTCAGAGTCCAGCACCACGGGGCGGAAGTCGAAGTCCAAGCCCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGTAGAAGATCTCCTCCACGGTATTCTCGTTCTCCTCCTCAACGCCATGCAAGGCGTTCTTTTTCACCAGCTCCACGCCATGCAAGGTCTCGGTCTCGCAGTTAT
GATTATGCATCCCCCCCACCAAGACAAAGGGCGTACTCCAGATCCATATCCCCGTCTCCACGTGGCAGACGGGATAGTCGAGAGAGGTCCTACCCACGACAGCCAAGCCG
TGGTAGGTCATACTCCCGATCCCCACAACTTGGTAGTGCAAGAAGTAGAAGTAGAAGTAGAAGTCAGAGTCCAGCACCACGGGGCGGAAGTCGAAGTCCAAGCCCTGTGA
GAGGCCGAAGGCTGAGTAGGAGCAGGAGCAGGAGCCGAAGCATTAGCCGGAGCCGGAGTCCACGACATAGTTCAAGACACGAAGAGGAGTATAGAAGTGAACTG
Protein sequenceShow/hide protein sequence
MIVEDLLHGILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRVQHHGAEVEVQAL