CuGenDBv2

Gene ID	Carg25975
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	succinate dehydrogenase subunit 6, mitochondrial-like
Genome location	Carg_Chr11:4622328..4625014
RNA-Seq Expression	Carg25975
Synteny	Carg25975
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008450314.1 PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo]

1.1e-74

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSEG
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]

6.5e-75

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG
        SFLAGG FGWTFG EIANHWYQLYRVDTM AQVKFMEWWRNKSEG
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

3.5e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF
        SFLAGG FGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNK+EGRF
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

4.7e-81

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF
        SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

4.4e-79

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE
        SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BP04 succinate dehydrogenase subunit 6, mitochondrial

5.4e-75

93.79

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSEG
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG

A0A5D3DY28 Succinate dehydrogenase subunit 6

5.4e-75

93.79

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHGPVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG
        SFLAGGAFGWTFG EIANHWYQLYR+DTM AQVKFMEWWRNKSEG
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

1.7e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF
        SFLAGG FGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNK+EGRF
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

2.3e-81

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF
        SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

2.1e-79

100

Show/hide

Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE
        SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE
Subjt:  SFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

1.4e-32

47.76

Show/hide

Query:  KHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWT
        +H EG K  W++ FS LD +     R+KPLP W+D+DV+EFIASDPV+GP LK  RE+  F L G+L+G     G+A KYS++ HG  L+   G   G  
Subjt:  KHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWT

Query:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG
         G E+A HWYQLY+ D  GA ++F+ WW +K  G
Subjt:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEG

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

2.7e-55

70.5

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLPSWS SDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAG

Query:  GAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE
        G FGWTFG E+ANH  QLY++DTM AQVKFMEWW  KS+
Subjt:  GAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

1.9e-56

70.5

Show/hide

Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLPSWS SDVEEFIASDPVHGP LKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAG

Query:  GAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE
        G FGWTFG E+ANH  QLY++DTM AQVKFMEWW  KS+
Subjt:  GAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSE

Sequences

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CDS sequence

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ATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCG
CGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTC
TTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGG
ACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTT
TTAG

mRNA sequence

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CAAAAGGAGCTTTCAAGAACGAGATTGCAGAGCTTGAAGAGAACAGCCATCGGCCATCGGGGGGTTCTTCTGCTTTCAATCGGATTAGTTTCTGTATTCTCAAATCGCCG
CAACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTC
GTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTTTGAAGACTGCCAGAGAAGCTGTAAA
CTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCAT
TCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAG
GGACGTTTTTAGGCTCTGATTTGCAGTTGAAGCAACAACACTCGCACTGCTGCTGCCATCTAAAATAAAAATGAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTT
TGTTTTTATGAGTTTAGAAAAGGACTATCCTTTTATTTTTATCTTCTGGAAATGACTGGTTCTAATTTGTAAGCTTGTTACAAATGTACTCATCTTTACCAATAACTACA
TCAATCCTGCCTTCTTTGTAATGCCTGGTGGACAACGTGAGCTTTACTGCTTGTTTTTCGGCCTTCTTTCTTGATCCAACTTCATGATCCTTCGAGATTTGTTTGTGCTT
GACTTAGAATATCCTCCTTTTAAAGCTTTCTACGGGTGAAGAAAGGACGACTTTAGATTACCCAACGACTTTACTTGAACAAGATATGTTCCATACGATGTTCCCATCTA
ACTGTGCTCCCCGAGTTCTAAGGATCTCGAATGTGAAGATTATTAAAAGGCCTCAAATTTTATTATGAGTTTTATATGTTTATATGAAATATATAAATTAG

Protein sequence

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MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGW
TFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

Carg25975 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome