CuGenDBv2

Gene ID	Carg25978
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Tubulin beta chain
Genome location	Carg_Chr11:4605230..4605658
RNA-Seq Expression	Carg25978
Synteny	Carg25978
Gene Ontology terms	GO:0000226 - microtubule cytoskeleton organization (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0009409 - response to cold (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003924 - GTPase activity (molecular function) GO:0005200 - structural constituent of cytoskeleton (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR000217 - Tubulin IPR002453 - Beta tubulin IPR003008 - Tubulin/FtsZ, GTPase domain IPR013838 - Beta tubulin, autoregulation binding site IPR036525 - Tubulin/FtsZ, GTPase domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7022144.1 Tubulin beta chain, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-80

100

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGIVSVSDHALD
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGIVSVSDHALD
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGIVSVSDHALD

KAG7023820.1 Tubulin beta-2 chain [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-74

99.25

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGI
        WAKGHYTEGAELID+VLDVVRKEAENCDCLQGI
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGI

XP_022925330.1 tubulin beta-6 chain-like [Cucurbita moschata]

2.4e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

XP_022974063.1 tubulin beta-6 chain-like [Cucurbita maxima]

2.4e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

XP_023531566.1 tubulin beta-6 chain-like [Cucurbita pepo subsp. pepo]

2.4e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UQW7 Tubulin beta chain

2.6e-74

99.24

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELID+VLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1EBG3 Tubulin beta chain

1.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1HAW4 Tubulin beta chain

2.6e-74

99.24

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELID+VLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1IAD3 Tubulin beta chain

1.2e-74

100

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

A0A6J1JC64 Tubulin beta chain

2.6e-74

99.24

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELID+VLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

SwissProt top hits

e value

%identity

Alignment

P93176 Tubulin beta chain

5.9e-76

96.97

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q43594 Tubulin beta-1 chain

1.0e-75

96.97

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q9ZPN9 Tubulin beta-2 chain

5.9e-76

96.97

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q9ZRB1 Tubulin beta-2 chain

5.9e-76

96.97

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+CDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Q9ZRB2 Tubulin beta-1 chain

1.0e-75

96.97

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY GTSDLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G12250.1 beta-6 tubulin

2.7e-76

95.45

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIGSKFWEV+CDEHGIDPTGRY G SDLQLERVNVYYNEASCGRYVPRA+LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELID+VLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G23860.1 tubulin beta 8

4.8e-73

92.42

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Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G23860.2 tubulin beta 8

4.8e-73

92.42

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+C EHGID TGRY G +DLQLERVNVYYNEASCGR+VPRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G62690.1 tubulin beta chain 2

5.7e-74

92.42

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

AT5G62700.1 tubulin beta chain 3

5.7e-74

92.42

Show/hide

Query:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN
        MREILH+QGGQCGNQIG+KFWEV+C EHGIDPTGRYTG SDLQLER+NVYYNEASCGR+VPRAVLMDLEPGTMDS+R+GPYGQ FRPDNFVFGQSGAGNN
Subjt:  MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN

Query:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
        WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG
Subjt:  WAKGHYTEGAELIDSVLDVVRKEAENCDCLQG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGGGAGATCCTTCACGTTCAAGGAGGTCAGTGTGGTAACCAGATCGGATCCAAGTTTTGGGAAGTGTTGTGTGATGAACATGGCATAGATCCTACTGGCCGATACAC
TGGAACCTCCGATTTGCAACTTGAACGTGTGAATGTGTACTACAATGAGGCTTCTTGTGGACGTTATGTTCCTCGTGCTGTGCTCATGGATCTCGAGCCTGGTACCATGG
ACAGTGTGAGAACGGGTCCTTATGGACAAATCTTCAGGCCGGACAATTTCGTCTTTGGGCAATCTGGTGCTGGTAATAACTGGGCCAAGGGGCATTACACAGAAGGAGCA
GAACTCATTGATTCTGTGCTCGATGTTGTCAGAAAAGAAGCCGAGAACTGTGATTGTCTTCAAGGTATAGTCTCTGTCTCAGATCATGCGCTTGATTAG

mRNA sequence

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Protein sequence

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MREILHVQGGQCGNQIGSKFWEVLCDEHGIDPTGRYTGTSDLQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGA
ELIDSVLDVVRKEAENCDCLQGIVSVSDHALD

Carg25978 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome