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Carg25993 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25993
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHTH cro/C1-type domain-containing protein
Genome locationCarg_Chr12:11596194..11596631
RNA-Seq ExpressionCarg25993
SyntenyCarg25993
Gene Ontology termsGO:0009408 - response to heat (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009737 - response to abscisic acid (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR001387 - Cro/C1-type helix-turn-helix domain
IPR010982 - Lambda repressor-like, DNA-binding domain superfamily
IPR013729 - Multiprotein bridging factor 1, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10712.1 multiprotein-bridging factor 1c [Cucumis melo var. makuwa]1.6e-6290.34Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  AAPVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRG+SGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

XP_004139340.1 multiprotein-bridging factor 1c [Cucumis sativus]6.7e-6492.41Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK TAAPVNARKLEEGTEPAALDRV  EVR AIQKARLEKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRG+SGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

XP_008458302.1 PREDICTED: multiprotein-bridging factor 1c [Cucumis melo]2.2e-6290.34Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  AAPVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRG+SGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

XP_022937454.1 multiprotein-bridging factor 1c [Cucurbita moschata]9.6e-71100Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

XP_022965996.1 multiprotein-bridging factor 1c [Cucurbita maxima]4.8e-7099.31Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

TrEMBL top hitse value%identityAlignment
A0A0A0LFV9 HTH cro/C1-type domain-containing protein3.2e-6492.41Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK TAAPVNARKLEEGTEPAALDRV  EVR AIQKARLEKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRG+SGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

A0A5A7V2S1 Multiprotein-bridging factor 1c1.0e-6290.34Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  AAPVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRG+SGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

A0A5D3CHG2 Multiprotein-bridging factor 1c8.0e-6390.34Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  AAPVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRG+SGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

A0A6J1FB80 multiprotein-bridging factor 1c4.7e-71100Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

A0A6J1HN61 multiprotein-bridging factor 1c2.3e-7099.31Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
        MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQA

Query:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        EL KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
Subjt:  ELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

SwissProt top hitse value%identityAlignment
Q5ZMC0 Endothelial differentiation-related factor 1 homolog3.1e-1944.7Show/hide
Query:  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERT
        DW+ V VL K  P A   +  +AV  A R G  V T KK+ AG NK+      N  KL+  TE    DRVP EV   IQ+ R  K M+Q +L  +INE+ 
Subjt:  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERT

Query:  QVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK
        QV+ +YE+G+A+PN  V+ K+E+ +G+KLRGK
Subjt:  QVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK

Q6GPQ6 Endothelial differentiation-related factor 1 homolog2.1e-2046.21Show/hide
Query:  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERT
        DW+ V VL K  P A   +  +A+  A R G  V T KK+ AG NK+ T    N  KL+  TE    DRVP EV   IQ+ R  K M+Q +L  +INE+ 
Subjt:  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERT

Query:  QVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK
        QV+ +YE GKA+PN  V+ K+E+V+G+KLRGK
Subjt:  QVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK

Q9LV58 Multiprotein-bridging factor 1c2.2e-5781.76Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KATAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKM
        MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNK  K+TA PV N +KLEE TEPAA+DRV  EVR  IQKARLEKKM
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KATAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKM

Query:  SQAELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        SQA+L KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK GK
Subjt:  SQAELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

Q9LXT3 Multiprotein-bridging factor 1b1.5e-3456.2Show/hide
Query:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ
        G I+QDWEPVV+ K  P A   RD K VN A RSGA + TV+KF+AGSNK A++   +N +KL++ TE  + DRVPTE++ AI +AR EKK++Q++L   
Subjt:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ

Query:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRGK
Subjt:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK

Q9SJI8 Multiprotein-bridging factor 1a3.2e-3252.55Show/hide
Query:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ
        G I+QDWEPVV+ K    A   RD K VN A RSGA + TV+KF+AG+NK A++   +N + L++ TE    +RVPTE++ AI +AR +KK++Q++L + 
Subjt:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ

Query:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRGK
Subjt:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK

Arabidopsis top hitse value%identityAlignment
AT2G42680.1 multiprotein bridging factor 1A2.2e-3352.55Show/hide
Query:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ
        G I+QDWEPVV+ K    A   RD K VN A RSGA + TV+KF+AG+NK A++   +N + L++ TE    +RVPTE++ AI +AR +KK++Q++L + 
Subjt:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ

Query:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRGK
Subjt:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK

AT3G24500.1 multiprotein bridging factor 1C1.5e-5881.76Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KATAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKM
        MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNK  K+TA PV N +KLEE TEPAA+DRV  EVR  IQKARLEKKM
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KATAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKM

Query:  SQAELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
        SQA+L KQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK GK
Subjt:  SQAELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

AT3G24500.2 multiprotein bridging factor 1C8.8e-3070.53Show/hide
Query:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KATAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKAR
        MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNK  K+TA PV N +KLEE TEPAA+DRV  EVR  +++ R
Subjt:  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KATAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKAR

AT3G58680.1 multiprotein bridging factor 1B1.1e-3556.2Show/hide
Query:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ
        G I+QDWEPVV+ K  P A   RD K VN A RSGA + TV+KF+AGSNK A++   +N +KL++ TE  + DRVPTE++ AI +AR EKK++Q++L   
Subjt:  GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQ

Query:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK
        INE+ QV+QEYE+GKA+PNQ +L+K+E+ LG KLRGK
Subjt:  INERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAGCCGATTCCCGGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGC
GATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACAGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGC
CGGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCGGAACTTGGGAAGCAGATTAACGAGAGGACT
CAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGAGCCGATTCCCGGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGC
GATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACAGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGC
CGGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCGGAACTTGGGAAGCAGATTAACGAGAGGACT
CAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTAA
Protein sequenceShow/hide protein sequence
MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERT
QVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK