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Carg26028 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26028
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPHD finger-like domain-containing protein 5B
Genome locationCarg_Chr13:263066..265738
RNA-Seq ExpressionCarg26028
SyntenyCarg26028
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR005345 - PHF5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2961638.1 PHD finger-like domain-containing 5B [Olea europaea subsp. europaea]5.0e-6398.25Show/hide
Query:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
        VAK+MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
Subjt:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT

Query:  DLFYERKKYGFKKR
        DLFYERKKYGFKKR
Subjt:  DLFYERKKYGFKKR

CAA2961639.1 PHD finger-like domain-containing 5B [Olea europaea subsp. europaea]5.0e-6398.25Show/hide
Query:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
        VAK+MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
Subjt:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT

Query:  DLFYERKKYGFKKR
        DLFYERKKYGFKKR
Subjt:  DLFYERKKYGFKKR

CAF2284836.1 unnamed protein product [Brassica napus]6.6e-6394.87Show/hide
Query:  TVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS
        TV+V+ +MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS
Subjt:  TVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS

Query:  AKTDLFYERKKYGFKKR
        AKTDLFYERKKYGFKKR
Subjt:  AKTDLFYERKKYGFKKR

KAG7019124.1 PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-91100Show/hide
Query:  KKKKKKKSKALTLSSVLPALSSSVSEAQCCRRCSSLPPSSLAADFSTALLPTVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTL
        KKKKKKKSKALTLSSVLPALSSSVSEAQCCRRCSSLPPSSLAADFSTALLPTVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTL
Subjt:  KKKKKKKSKALTLSSVLPALSSSVSEAQCCRRCSSLPPSSLAADFSTALLPTVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTL

Query:  VRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        VRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  VRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

THG08405.1 hypothetical protein TEA_015305 [Camellia sinensis var. sinensis]5.0e-6399.12Show/hide
Query:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
        VA+SMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
Subjt:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT

Query:  DLFYERKKYGFKKR
        DLFYERKKYGFKKR
Subjt:  DLFYERKKYGFKKR

TrEMBL top hitse value%identityAlignment
A0A0D3C2Y7 Uncharacterized protein4.2e-6394.87Show/hide
Query:  TVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS
        TV V+ +MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS
Subjt:  TVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS

Query:  AKTDLFYERKKYGFKKR
        AKTDLFYERKKYGFKKR
Subjt:  AKTDLFYERKKYGFKKR

A0A3P6CUE1 Uncharacterized protein (Fragment)4.2e-6394.87Show/hide
Query:  TVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS
        TV V+ +MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS
Subjt:  TVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGS

Query:  AKTDLFYERKKYGFKKR
        AKTDLFYERKKYGFKKR
Subjt:  AKTDLFYERKKYGFKKR

A0A445FPW2 PHD finger-like domain-containing protein 5B1.6e-6297.37Show/hide
Query:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
        V ++MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
Subjt:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT

Query:  DLFYERKKYGFKKR
        DLFYERKKYGFKKR
Subjt:  DLFYERKKYGFKKR

A0A4S4DZR4 Uncharacterized protein2.4e-6399.12Show/hide
Query:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
        VA+SMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
Subjt:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT

Query:  DLFYERKKYGFKKR
        DLFYERKKYGFKKR
Subjt:  DLFYERKKYGFKKR

A0A6A5M4Z6 Uncharacterized protein1.6e-6297.37Show/hide
Query:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
        V ++MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT
Subjt:  VAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKT

Query:  DLFYERKKYGFKKR
        DLFYERKKYGFKKR
Subjt:  DLFYERKKYGFKKR

SwissProt top hitse value%identityAlignment
P0DI19 PHD finger-like domain-containing protein 5A2.8e-6499.09Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83870 PHD finger-like domain-containing protein 5A3.2e-6091.82Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83871 PHD finger-like domain-containing protein 5A3.2e-6091.82Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q0WMV8 PHD finger-like domain-containing protein 5B2.8e-6499.09Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q7RTV0 PHD finger-like domain-containing protein 5A3.2e-6091.82Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Arabidopsis top hitse value%identityAlignment
AT1G07170.1 PHF5-like protein2.0e-6599.09Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.2 PHF5-like protein2.0e-6599.09Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.3 PHF5-like protein2.0e-6599.09Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT2G30000.1 PHF5-like protein2.0e-6599.09Show/hide
Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAAAAAAAAAAAAAAAAAGAGTAAAGCCCTAACTCTTTCATCCGTGCTCCCCGCCCTCTCCTCCTCCGTTTCAGAAGCTCAGTGTTGCCGCCGCTGCAGCAGCCTCCC
TCCTAGCAGTCTTGCCGCTGATTTTTCTACTGCATTGTTACCGACTGTTGCAGTTGCAAAAAGCATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAG
GAATCGCCATTGGCCGACTTTGTGAGAAGTGTGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGG
TCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGT
TAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGG
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAAAAAAAAAAGAGTAAAGCCCTAACTCTTTCATCCGTGCTCCCCGCCCTCTCCTCCTCCGTTTCAGAAGCTCAGTGTTGCCGCCGCTGCAGCAGCCTCCC
TCCTAGCAGTCTTGCCGCTGATTTTTCTACTGCATTGTTACCGACTGTTGCAGTTGCAAAAAGCATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAG
GAATCGCCATTGGCCGACTTTGTGAGAAGTGTGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGG
TCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGT
TAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGG
Protein sequenceShow/hide protein sequence
KKKKKKKSKALTLSSVLPALSSSVSEAQCCRRCSSLPPSSLAADFSTALLPTVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYG
SFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR