; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg26074 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26074
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H2A
Genome locationCarg_Chr06:4963965..4978466
RNA-Seq ExpressionCarg26074
SyntenyCarg26074
Gene Ontology termsGO:0070828 - heterochromatin organization (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028431.1 putative histone H2A.5, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-79100Show/hide
Query:  MISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTLAIVRNGTLYLRQVSSET
        MISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTLAIVRNGTLYLRQVSSET
Subjt:  MISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTLAIVRNGTLYLRQVSSET

Query:  SVPQGKKSDSNQNPNSIDKASFRACLAAVQVSFEAFIDDRDQISLSLHIWSPTLQIKK
        SVPQGKKSDSNQNPNSIDKASFRACLAAVQVSFEAFIDDRDQISLSLHIWSPTLQIKK
Subjt:  SVPQGKKSDSNQNPNSIDKASFRACLAAVQVSFEAFIDDRDQISLSLHIWSPTLQIKK

XP_008454292.1 PREDICTED: probable histone H2A.5 [Cucumis melo]3.2e-1142.5Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL
        +S S KA LQ   GR  RYLKKGRY KRT+  A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++ N   +
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL

Query:  YLRQVSSETSVPQGKKSDSN
         L + ++  S P  +K+  +
Subjt:  YLRQVSSETSVPQGKKSDSN

XP_015875055.1 histone H2A.1 [Ziziphus jujuba]3.8e-1242.75Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY
        +S S KA LQ   GR  R+LKKGRY +RT   A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++ N    
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY

Query:  LRQVSSETSVPQGKKSDSNQNPNSIDKASFR
        L    S T+    K S + ++P    KASFR
Subjt:  LRQVSSETSVPQGKKSDSNQNPNSIDKASFR

XP_022150784.1 probable histone H2A.5 [Momordica charantia]6.5e-1245.53Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL----AIVRNGTLYLRQVS
        +S S KA LQ   GR  RYLKKGRY KRT+  A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH L        +G L     I   G L      
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL----AIVRNGTLYLRQVS

Query:  SETSVPQGKKSDSNQNPNSIDKA
        +   V   KK+ SN  P++ +KA
Subjt:  SETSVPQGKKSDSNQNPNSIDKA

XP_038890710.1 probable histone H2A.5 [Benincasa hispida]2.5e-1143.33Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL
        IS S KA LQ   GR  RYLKKGRY KRT+  A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++ N   +
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL

Query:  YLRQVSSETSVPQGKKSDSN
         L + ++  S P  +K+  +
Subjt:  YLRQVSSETSVPQGKKSDSN

TrEMBL top hitse value%identityAlignment
A0A1S3BZ15 Histone H2A1.6e-1142.5Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL
        +S S KA LQ   GR  RYLKKGRY KRT+  A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++ N   +
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL

Query:  YLRQVSSETSVPQGKKSDSN
         L + ++  S P  +K+  +
Subjt:  YLRQVSSETSVPQGKKSDSN

A0A5A7TYC1 Histone H2A1.6e-1142.5Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL
        +S S KA LQ   GR  RYLKKGRY KRT+  A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++ N   +
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL

Query:  YLRQVSSETSVPQGKKSDSN
         L + ++  S P  +K+  +
Subjt:  YLRQVSSETSVPQGKKSDSN

A0A5D2IUA5 Histone H2A2.7e-1143.8Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVR--NGT
        +S S KA LQ   GR  RYLKKGRY +R    A +YLV V KYLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++   N  
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVR--NGT

Query:  LYLRQVSSETSVPQGKKSDSN
        L  ++ SS +   Q  KS S+
Subjt:  LYLRQVSSETSVPQGKKSDSN

A0A6J1DB39 Histone H2A3.1e-1245.53Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL----AIVRNGTLYLRQVS
        +S S KA LQ   GR  RYLKKGRY KRT+  A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH L        +G L     I   G L      
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL----AIVRNGTLYLRQVS

Query:  SETSVPQGKKSDSNQNPNSIDKA
        +   V   KK+ SN  P++ +KA
Subjt:  SETSVPQGKKSDSNQNPNSIDKA

A0A6P3ZBW5 Histone H2A1.8e-1242.75Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY
        +S S KA LQ   GR  R+LKKGRY +RT   A IYL  V +YLA+ VL+LA N  RDNKKN+IN RH          L K L   T+ +  ++ N    
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY

Query:  LRQVSSETSVPQGKKSDSNQNPNSIDKASFR
        L    S T+    K S + ++P    KASFR
Subjt:  LRQVSSETSVPQGKKSDSNQNPNSIDKASFR

SwissProt top hitse value%identityAlignment
A2WQG7 Probable histone H2A.53.9e-1241.18Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL
        +S S KA LQ   GR  RYLKKGRY +R    A +YL  V +YLA+ VL+LA N  RDNKKN+I  RH          L K LA  T+    ++ N   +
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL

Query:  YLRQVSSETSVPQGKKSDS
         L + ++E +   GK++ S
Subjt:  YLRQVSSETSVPQGKKSDS

A2XZN0 Probable histone H2A.68.8e-1255.71Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPL
        +S S KA LQ   GR  RYLKKGRY +R    A +YL  V +YLA+ VL+LA N  RDNKKN+I  RH L
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPL

Q94E96 Probable histone H2A.53.9e-1241.18Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL
        +S S KA LQ   GR  RYLKKGRY +R    A +YL  V +YLA+ VL+LA N  RDNKKN+I  RH          L K LA  T+    ++ N   +
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN-GTL

Query:  YLRQVSSETSVPQGKKSDS
         L + ++E +   GK++ S
Subjt:  YLRQVSSETSVPQGKKSDS

Q94F49 Probable histone H2A.51.0e-1240.16Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY
        +S S KA LQ   GR  RYLKKGRY  R    A +YL  V +YLA+ VL+LA N  RDNKKN+IN RH          L + L   T+ +  ++ N    
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY

Query:  LRQVSSETSVPQGKKSDSNQNP
        L    S  S  Q +K+ + ++P
Subjt:  LRQVSSETSVPQGKKSDSNQNP

Q9LZ46 Probable histone H2A.41.8e-1251.22Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL
        +S S K+ LQ   GR  RYLKKGRY KR    A +YL  V +YLA+ VL+LA N  RDNKKN+I  RH L        +GTL
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL

Arabidopsis top hitse value%identityAlignment
AT1G08880.1 Histone superfamily protein1.3e-1040.62Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN
        +S S KA LQ   GR  R+LK G+Y +R    A +YL  V +YLA+ VL+LA N  RDNKK +I  RH          L K L + T+    ++ N
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN

AT1G54690.1 gamma histone variant H2AX1.7e-1040.62Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN
        +S S KA LQ   GR  R+LK G+Y +R    A +YL  V +YLA+ VL+LA N  RDNKK +I  RH          L K L + T+    ++ N
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRN

AT5G02560.1 histone H2A 121.3e-1351.22Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL
        +S S K+ LQ   GR  RYLKKGRY KR    A +YL  V +YLA+ VL+LA N  RDNKKN+I  RH L        +GTL
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTL

AT5G27670.1 histone H2A 77.4e-1440.16Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY
        +S S KA LQ   GR  RYLKKGRY  R    A +YL  V +YLA+ VL+LA N  RDNKKN+IN RH          L + L   T+ +  ++ N    
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY

Query:  LRQVSSETSVPQGKKSDSNQNP
        L    S  S  Q +K+ + ++P
Subjt:  LRQVSSETSVPQGKKSDSNQNP

AT5G59870.1 histone H2A 64.5e-1138.14Show/hide
Query:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY
        +S S KA LQ   GR  R+LKKGRY +R    A +Y+  V +YLA+ VL+LA N  RDNKK++I  RH          L K L+  T+    ++ N    
Subjt:  ISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRH---------PLPKALATATVGTLAIVRNGTLY

Query:  LRQVSSETSVPQGKKSDS
        L    S T   + K + S
Subjt:  LRQVSSETSVPQGKKSDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCCAACTCCTTCAAAGCTGCACTCCAATGTCTAGATGGAAGAACTAGACGGTACCTTAAGAAAGGCCGCTACGAAAAGCGCACTAGCGTAGATGCTCTGATCTA
CCTAGTTGTCGTCCCCAAATACCTTGCTTCTATGGTTTTGAAATTGGCCACCAATGTAACGCGTGATAACAAGAAAAATAAGATAAACTCTAGACATCCATTACCCAAGG
CTTTAGCCACCGCTACTGTCGGAACTCTAGCTATTGTTAGAAATGGCACACTCTACCTCCGACAAGTCTCATCTGAAACAAGTGTGCCACAAGGCAAAAAATCTGATTCG
AACCAAAATCCTAACTCAATTGATAAAGCTTCATTTCGAGCCTGCTTAGCTGCCGTTCAAGTTTCCTTTGAAGCCTTCATAGATGATCGTGACCAAATTTCATTAAGTCT
GCATATTTGGAGTCCCACATTGCAGATAAAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCTCCAACTCCTTCAAAGCTGCACTCCAATGTCTAGATGGAAGAACTAGACGGTACCTTAAGAAAGGCCGCTACGAAAAGCGCACTAGCGTAGATGCTCTGATCTA
CCTAGTTGTCGTCCCCAAATACCTTGCTTCTATGGTTTTGAAATTGGCCACCAATGTAACGCGTGATAACAAGAAAAATAAGATAAACTCTAGACATCCATTACCCAAGG
CTTTAGCCACCGCTACTGTCGGAACTCTAGCTATTGTTAGAAATGGCACACTCTACCTCCGACAAGTCTCATCTGAAACAAGTGTGCCACAAGGCAAAAAATCTGATTCG
AACCAAAATCCTAACTCAATTGATAAAGCTTCATTTCGAGCCTGCTTAGCTGCCGTTCAAGTTTCCTTTGAAGCCTTCATAGATGATCGTGACCAAATTTCATTAAGTCT
GCATATTTGGAGTCCCACATTGCAGATAAAGAAGTAG
Protein sequenceShow/hide protein sequence
MISNSFKAALQCLDGRTRRYLKKGRYEKRTSVDALIYLVVVPKYLASMVLKLATNVTRDNKKNKINSRHPLPKALATATVGTLAIVRNGTLYLRQVSSETSVPQGKKSDS
NQNPNSIDKASFRACLAAVQVSFEAFIDDRDQISLSLHIWSPTLQIKK