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Carg26085 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26085
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCCHC-type domain-containing protein
Genome locationCarg_Chr06:5197169..5199499
RNA-Seq ExpressionCarg26085
SyntenyCarg26085
Gene Ontology termsNA
InterPro domainsIPR007052 - CS domain
IPR008978 - HSP20-like chaperone


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596967.1 Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia]6.3e-39100Show/hide
Query:  MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQ
        MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQ
Subjt:  MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQ

KAG7028442.1 hypothetical protein SDJN02_09623, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-89100Show/hide
Query:  MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQFDGHYDHWGELMENLLRAKGL
        MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQFDGHYDHWGELMENLLRAKGL
Subjt:  MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQFDGHYDHWGELMENLLRAKGL

Query:  WGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        WGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
Subjt:  WGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

KAG7558348.1 Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]8.2e-3177.38Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        +P FDGHYDHW ELMENLLRAKGLW LVEEGYTE  EGI++ A QK+++E+ KMKDHQVKHYLF+AID+VVFEQIL+RKTSK I
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

XP_023514056.1 uncharacterized protein LOC111778448 [Cucurbita pepo subsp. pepo]1.5e-3284.52Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        +PQFDGHYDHW ELMENLL AKGLW LVEEG TE  EGI+V A  KRNLEEFKMKDHQVKHYLF+AID+VVFEQILNRKTSKNI
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

XP_023544858.1 uncharacterized protein LOC111804330 [Cucurbita pepo subsp. pepo]1.9e-3586.9Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        +PQFDGHYDHW ELMENLLRAKGLW LVEEGYTEP EGI+V A QKRNL+EFKMKDHQVKHYLF+AID+VVFEQILNRK SKNI
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

TrEMBL top hitse value%identityAlignment
A0A0D3AKC8 Uncharacterized protein2.4e-2871.43Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        +P FDGHYDHW ELMENLLR KGLW LVEEG TEP  G+++   QK++L++ K KDHQVKHYLF+AID+VVFEQIL+RKTSK I
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

A0A0D3ATR3 Uncharacterized protein6.0e-2770.37Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTS
        +P+FDGHYDHW ELMENLLRAKGLW +V EGYTE  EG++  A Q++ LE+ KM+DHQVKHYLF+AID  VFEQIL+R TS
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTS

A0A0D3B9C9 Uncharacterized protein2.0e-3076.83Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSK
        +P FDGHYDHW ELMENLLRAKGLW LVEEG+TEP  G++  A Q+R+LEE KMKDHQVKHYLF+AID+VVFEQIL+R+TSK
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSK

A0A6A6N2Q1 gag_pre-integrs domain-containing protein6.6e-2664.29Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        +P FDGHYDHW ELMENLLRAKGLW LVE G+TEP EG  +   Q+   ++ ++KDHQVKHYLF+AID+ VFEQIL+R+T+K++
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

A0A6A6N3E8 Uncharacterized protein6.6e-2664.29Show/hide
Query:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI
        +P FDGHYDHW ELMENLLRAKGLW LVE G+TEP EG  +   Q+   ++ ++KDHQVKHYLF+AID+ VFEQIL+R+T+K++
Subjt:  VPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI

SwissProt top hitse value%identityAlignment
P0C8Z0 Uncharacterized protein OsI_0279402.9e-1058.93Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSA-KGLHGASFDFTLEL
        SR+PEV WAQR DK+Y+TV L DAKD  V  EP GVF+FSA  G  G  ++  LEL
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSA-KGLHGASFDFTLEL

Q6ID70 Co-chaperone protein p23-21.2e-2173.02Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQF
        SRNPEVLWAQRSDK+YLTVALPDAKDISVKCEP G+F+FSA G  G  F+F+LEL+G I+ ++
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQF

Q6YYB0 Uncharacterized protein Os08g03595002.9e-1058.93Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSA-KGLHGASFDFTLEL
        SR+PEV WAQR DK+Y+TV L DAKD  V  EP GVF+FSA  G  G  ++  LEL
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSA-KGLHGASFDFTLEL

Q8L7U4 Co-chaperone protein p23-13.5e-0850Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAK-GLHGASFDFTLEL
        SR+PEV WA+ ++K++LTV L D KD  V  +P GVF FSAK G     ++  LEL
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAK-GLHGASFDFTLEL

Q9FR62 Co-chaperone protein p23-13.2e-0950Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSA-KGLHGASFDFTLELFGSI
        SR+P V WAQRSD +Y+TV LPDA+D+ +K EP G F FSA  G     ++  L+L  S+
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSA-KGLHGASFDFTLELFGSI

Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein6.8e-0727.27Show/hide
Query:  HYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKN
        +YD+W   M+ +L A  +W +VE+G+ EP     +  TQK  L + + +D +    +++ +D+  FE+++   ++K+
Subjt:  HYDHWGELMENLLRAKGLWGLVEEGYTEPTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKN

AT3G03773.1 HSP20-like chaperones superfamily protein8.8e-2373.02Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQF
        SRNPEVLWAQRSDK+YLTVALPDAKDISVKCEP G+F+FSA G  G  F+F+LEL+G I+ ++
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQF

AT3G03773.2 HSP20-like chaperones superfamily protein2.6e-2272.58Show/hide
Query:  RNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQF
        RNPEVLWAQRSDK+YLTVALPDAKDISVKCEP G+F+FSA G  G  F+F+LEL+G I+ ++
Subjt:  RNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQF

AT4G02450.1 HSP20-like chaperones superfamily protein2.5e-0950Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAK-GLHGASFDFTLEL
        SR+PEV WA+ ++K++LTV L D KD  V  +P GVF FSAK G     ++  LEL
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAK-GLHGASFDFTLEL

AT4G02450.2 HSP20-like chaperones superfamily protein2.5e-0950Show/hide
Query:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAK-GLHGASFDFTLEL
        SR+PEV WA+ ++K++LTV L D KD  V  +P GVF FSAK G     ++  LEL
Subjt:  SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAK-GLHGASFDFTLEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTAGATGATGTTGTCTGTAATATGTTTGAATGGTTGCAAGACTGTAGCCGTAACCCGGAGGTTCTATGGGCTCAGCGTTCTGATAAGCTTTATCTCACTGTTGC
TTTACCTGATGCCAAAGATATTTCTGTCAAGTGTGAACCTCACGGGGTTTTCACCTTCTCAGCGAAGGGGCTGCATGGCGCATCTTTTGACTTCACTTTGGAACTCTTCG
GGTCCATAGTGCCTCAGTTTGATGGACACTATGATCATTGGGGTGAGTTGATGGAAAACCTCTTGCGTGCCAAGGGTTTGTGGGGTCTAGTGGAAGAGGGTTACACTGAA
CCGACAGAGGGAATCAAAGTGATTGCAACGCAGAAAAGGAATCTTGAGGAGTTTAAGATGAAGGACCATCAAGTGAAGCACTACCTGTTCGAAGCAATTGATCAAGTTGT
GTTTGAACAGATCTTGAATCGCAAAACATCTAAGAACATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTAGATGATGTTGTCTGTAATATGTTTGAATGGTTGCAAGACTGTAGCCGTAACCCGGAGGTTCTATGGGCTCAGCGTTCTGATAAGCTTTATCTCACTGTTGC
TTTACCTGATGCCAAAGATATTTCTGTCAAGTGTGAACCTCACGGGGTTTTCACCTTCTCAGCGAAGGGGCTGCATGGCGCATCTTTTGACTTCACTTTGGAACTCTTCG
GGTCCATAGTGCCTCAGTTTGATGGACACTATGATCATTGGGGTGAGTTGATGGAAAACCTCTTGCGTGCCAAGGGTTTGTGGGGTCTAGTGGAAGAGGGTTACACTGAA
CCGACAGAGGGAATCAAAGTGATTGCAACGCAGAAAAGGAATCTTGAGGAGTTTAAGATGAAGGACCATCAAGTGAAGCACTACCTGTTCGAAGCAATTGATCAAGTTGT
GTTTGAACAGATCTTGAATCGCAAAACATCTAAGAACATTTAG
Protein sequenceShow/hide protein sequence
MLVDDVVCNMFEWLQDCSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFTFSAKGLHGASFDFTLELFGSIVPQFDGHYDHWGELMENLLRAKGLWGLVEEGYTE
PTEGIKVIATQKRNLEEFKMKDHQVKHYLFEAIDQVVFEQILNRKTSKNI