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Carg26089 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26089
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA ligase
Genome locationCarg_Chr06:5262006..5262684
RNA-Seq ExpressionCarg26089
SyntenyCarg26089
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053852.1 hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa]9.9e-1966.67Show/hide
Query:  TFLLLFLAFAFLISST---AVPTTRVLQSNFD-DPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA
        TF LLFLAF+FL+SS+   AVPTTR+L+S F+  PS Q  V +D RDLEI   DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Subjt:  TFLLLFLAFAFLISST---AVPTTRVLQSNFD-DPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA

KAG6580910.1 hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1861.46Show/hide
Query:  MGHKPLLPL-TFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA
        MG K  L L   LLLFL F+ L+SS AVPTTR+ +S FD PSAQ  VFQD RDLE +G D           GR VLENNDYPGTGANNHHDP +PA
Subjt:  MGHKPLLPL-TFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA

KAG6596972.1 hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia]1.5e-46100Show/hide
Query:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP
        MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP
Subjt:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP

KAG7017658.1 hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma]7.6e-1961.46Show/hide
Query:  MGHKPLLPL-TFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA
        MG K  L L   LLLFL F+ L+SS AVPTTR+ +S FD PSAQ  VFQD RDLE +G D           GR+VLENNDYPGTGANNHHDP +PA
Subjt:  MGHKPLLPL-TFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA

KGN59481.1 hypothetical protein Csa_001422 [Cucumis sativus]1.4e-2068.54Show/hide
Query:  TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA
        TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI   DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Subjt:  TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA

TrEMBL top hitse value%identityAlignment
A0A0A0LHJ0 Uncharacterized protein6.7e-2168.54Show/hide
Query:  TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA
        TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI   DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Subjt:  TFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA

A0A2R6Q481 Protein Rev like6.1e-1452.13Show/hide
Query:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP
        M HK  LPL  L+LFL F+F++SS AVPT+R L+S  DDP  Q  +  D  ++++  +  L  V+E   +GR+ LENNDYPGTGANNHHDP +P
Subjt:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP

A0A5A7UDI6 Uncharacterized protein4.8e-1966.67Show/hide
Query:  TFLLLFLAFAFLISST---AVPTTRVLQSNFD-DPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA
        TF LLFLAF+FL+SS+   AVPTTR+L+S F+  PS Q  V +D RDLEI   DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Subjt:  TFLLLFLAFAFLISST---AVPTTRVLQSNFD-DPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA

A0A5B6ZB32 Uncharacterized protein (Fragment)3.5e-1453.19Show/hide
Query:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP
        M HK  L L  L+LFL F F++SS AVPT+R L+S   DP+AQ    Q   D+   G    E ++ER  EGR+ +E+NDYPGTGANNHHDPK+P
Subjt:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP

A0A7J0GF03 Uncharacterized protein1.8e-1352.13Show/hide
Query:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP
        M HK  LPL  L+LFL F+F++SS AVPT+R L+S  DDP  Q  +  D  ++E+  +     V+E   +GR+ LENNDYPGTGANNHHDP +P
Subjt:  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTT
TGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGG
TTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAG
mRNA sequenceShow/hide mRNA sequence
CCTTTTCTGTTTGTTTCCCGAGAAAAAGAGAAAGAAAAAGAGGAAAGAAAATGGGTCACAAACCTCTCCTCCCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTT
CTCATTTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGG
TGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTC
CTGCTACCAAACCATAGTTAATTTTCCTTCTCTTTATTACATATGCATTACCAAATTCTAGAAATGGAAGAACTTGTTTGGAGTTTTTTTGGCTTAATTATTGTAGTTCT
AATAAATGAACTTTAAGATGTAATATATTTTTAATTAAAAAAATTGATAACTTATATTTTGT
Protein sequenceShow/hide protein sequence
MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP