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Carg26093 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26093
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionupstream activation factor subunit UAF30
Genome locationCarg_Chr03:1316..3091
RNA-Seq ExpressionCarg26093
SyntenyCarg26093
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603170.1 hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sororia]5.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
KAG7033467.1 hypothetical protein SDJN02_03189 [Cucurbita argyrosperma subsp. argyrosperma]9.9e-32100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKSRTPSPSPSSNSDSYCSTRGSQKECDL
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKSRTPSPSPSSNSDSYCSTRGSQKECDL
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKSRTPSPSPSSNSDSYCSTRGSQKECDL
XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]5.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
XP_022967913.1 protein TRI1 isoform X1 [Cucurbita maxima]5.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
XP_022967914.1 upstream activation factor subunit UAF30 isoform X2 [Cucurbita maxima]5.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
TrEMBL top hitse value%identityAlignment
A0A0B2RBX9 SWIB domain-containing protein1.4e-1597.83Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
A0A445JN42 SWIB domain-containing protein1.4e-1597.83Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
A0A6J1ELR1 upstream activation factor subunit UAF302.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
A0A6J1HWJ0 protein TRI1 isoform X12.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
A0A6J1HY33 upstream activation factor subunit UAF30 isoform X22.8e-16100Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
        MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G26810.1 SWIB/MDM2 domain superfamily protein2.5e-1791.11Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCF
        MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCF
AT4G26810.2 SWIB/MDM2 domain superfamily protein2.5e-1791.11Show/hide
Query:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCF
        MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF
Subjt:  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTC
CCAAATTTCTCGTCTGGGCTGTTTCAAGTCGAGGACTCCTTCTCCTTCCCCTTCTTCAAACTCCGATTCATATTGTTCAACCAGAGGGTCACAGAAGGAATGTGATCTTT
GA
mRNA sequenceShow/hide mRNA sequence
AAATTCAAGGGCTCCAAGTTCTCCTTCCCCTTGGTGATCCGACCCTAATTCGCTTTAGCCGCTGTATTTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCC
TTTTCCCAGTGGAGGTGGAAGCGAACTGGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCT
CGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTCGAGGACTCCTTCTCCTTCCCCTTCTTCAAACTCCGATT
CATATTGTTCAACCAGAGGGTCACAGAAGGAATGTGATCTTTGA
Protein sequenceShow/hide protein sequence
MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKSRTPSPSPSSNSDSYCSTRGSQKECDL