; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg26126 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26126
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein 5, chloroplastic
Genome locationCarg_Chr17:4621403..4623262
RNA-Seq ExpressionCarg26126
SyntenyCarg26126
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013851.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.1e-75100Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV
        MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022154476.1 50S ribosomal protein 5, chloroplastic [Momordica charantia]4.4e-6185.99Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV
        MAFLLCSNPLS SL+SS FSPSPSPSPSCFP   A  +S+LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDV
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022949869.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata]2.5e-7297.48Show/hide
Query:  MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKE
        MAFLLCSNPLSISLHSSTF  SPSPSPSPSCFPANFA LNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_022967912.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita maxima]1.0e-7094.9Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV
        MAFLLCSNPLSISLHSST SPSPSPSPSCFP NF+ LNSM LMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEID TGETDSNEPKP AEAKKEDV
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

XP_023543496.1 50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]8.0e-7195.6Show/hide
Query:  MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKE
        MAFLLCSNPLSISLHSSTF  SPSPSPSPSCFP NFA LNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSF VKAASEIDATGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        DV VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein5.1e-5581.41Show/hide
Query:  AFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVS
        +FLL SNPLS S H ST     SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLRN SFVENT S +VKAASE DATGETDS++ +P AEAKKEDV 
Subjt:  AFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVS

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A1S3C2X0 50S ribosomal protein 5, chloroplastic9.0e-5278.21Show/hide
Query:  AFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVS
        +FLLCSNPLS S H ST  P       CFP   A  +SMLLMKP GFQPK FNGVRLRN  FVENT S +VKAASE DATGE DS+E +P AEAKKEDV 
Subjt:  AFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVS

Query:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic2.1e-6185.99Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV
        MAFLLCSNPLS SL+SS FSPSPSPSPSCFP   A  +S+LLM+P GFQPK FNGVRLRN SFVENT S IVKA SEID TGETDSNEP+P AEAKKEDV
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQK RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like1.2e-7297.48Show/hide
Query:  MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKE
        MAFLLCSNPLSISLHSSTF  SPSPSPSPSCFPANFA LNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKP AEAKKE
Subjt:  MAFLLCSNPLSISLHSSTF--SPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKE

Query:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  DVSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

A0A6J1HS41 50S ribosomal protein 5 alpha, chloroplastic-like5.1e-7194.9Show/hide
Query:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV
        MAFLLCSNPLSISLHSST SPSPSPSPSCFP NF+ LNSM LMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEID TGETDSNEPKP AEAKKEDV
Subjt:  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDV

Query:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
Subjt:  SVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic2.5e-1445.28Show/hide
Query:  LLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFV---ENTVSFIVKAASEIDATGETDSNEPKPLAEAKKED-
        LLC N  S +    T S S  P P+  P +   +         G       G R+  P      +N++ FI  AA+  D+       E    +E+KKE  
Subjt:  LLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFV---ENTVSFIVKAASEIDATGETDSNEPKPLAEAKKED-

Query:  -VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
         VSVDKLPLESKL+ER E+  +MKLAKKIRL+RKRLV+KR LRKKG WPPSKMKKL+ V
Subjt:  -VSVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic5.5e-1441.1Show/hide
Query:  ISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKL
        +SL S     S + S S FP     ++  LL       P     +    P   +   + +   ++  + T   D ++ K     ++ ++SV  LPLESKL
Subjt:  ISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESKL

Query:  QERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        Q +LEQK +MK+AKKIRLRR RL+RKR LRK+G WPPSKMKKLKNV
Subjt:  QERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic1.3e-1549.69Show/hide
Query:  LLCSNPL-SISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPLAEAKKEDVS
        LLC N L S+S  SS+ S     SPS     FA  + +L +KP   + K  N V L   S   +    +VK AAS +D        EPK +  A    V 
Subjt:  LLCSNPL-SISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPLAEAKKEDVS

Query:  VDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Subjt:  VDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 59.3e-1749.69Show/hide
Query:  LLCSNPL-SISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPLAEAKKEDVS
        LLC N L S+S  SS+ S     SPS     FA  + +L +KP   + K  N V L   S   +    +VK AAS +D        EPK +  A    V 
Subjt:  LLCSNPL-SISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVK-AASEIDATGETDSNEPKPLAEAKKEDVS

Query:  VDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESK  +    LE + +MKLAKKIRLRRKRLVRKR +RKKGRWPPSKMKK KNV
Subjt:  VDKLPLESKLQER---LEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCCATCGCCGTCGCCGTCATGTTTTCCAGCGAATTTCGCCACCCT
GAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAAACCCCTCCTTCGTTGAAAATACGGTGTCATTTATTGTCAAGG
CTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCTTGCAGAAGCTAAAAAGGAGGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAA
CTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCC
TCCATCAAAAATGAAGAAGTTGAAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATCCAAAGGCAGCGAGGGGCTCTCAAACCAGAGAAAAACACGATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCATCTCTCTCCATTCATCTACATTTTCGCCGTCGCC
ATCGCCGTCGCCGTCATGTTTTCCAGCGAATTTCGCCACCCTGAATTCTATGTTACTCATGAAGCCTACTGGGTTTCAGCCAAAACACTTCAATGGGGTTCGACTTCGAA
ACCCCTCCTTCGTTGAAAATACGGTGTCATTTATTGTCAAGGCTGCATCTGAGATCGATGCTACGGGAGAAACCGACAGTAACGAACCGAAGCCCCTTGCAGAAGCTAAA
AAGGAGGATGTTTCAGTTGACAAACTTCCATTAGAATCAAAACTGCAAGAAAGGCTGGAGCAGAAGGCAAGGATGAAGTTGGCAAAAAAGATTAGGCTGCGGAGGAAGCG
GCTTGTTCGGAAACGCCATTTGAGGAAGAAAGGACGATGGCCTCCATCAAAAATGAAGAAGTTGAAGAACGTTTGACAATCTTCAGCTCCTTCAATTCTTGCAGGTTTAG
AGGTGACCCCATTTCTCCTCATTGCTTCCAACTTTCTCTGTCTAATTTATTTATACTTTCATGAAAATGTACTTGCTTCCTTATGTATCTGAAAGAATCCAGTGAGTGAT
GAAATGTGCAAATTGTGCTCTTAGTTTTGAATGACTAATGGTCAGTTGAAAGGAACTGAATACTTGCCTCTAGACTTTGGTTAGAACATTCAACTTCCCATCATATAGAG
CTTGCTAAAAAACCTTGCACAAAGGCCATATCTTAGGAACTTAGACTGTCCAAATTGGTTCATTAGAAGCTTTTTTTCCTTTTAAATGTACGTCGAGATCAACGCCCCCG
TCGAGGGACAAGTTTGAGCTCG
Protein sequenceShow/hide protein sequence
MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFATLNSMLLMKPTGFQPKHFNGVRLRNPSFVENTVSFIVKAASEIDATGETDSNEPKPLAEAKKEDVSVDKLPLESK
LQERLEQKARMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV