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Carg26146 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26146
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand
Genome locationCarg_Chr12:3331014..3331292
RNA-Seq ExpressionCarg26146
SyntenyCarg26146
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585661.1 putative calcium-binding protein CML15, partial [Cucurbita argyrosperma subsp. sororia]1.4e-43100Show/hide
Query:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC
        MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC
Subjt:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC

KAG6585662.1 hypothetical protein SDJN03_18395, partial [Cucurbita argyrosperma subsp. sororia]5.1e-3378.26Show/hide
Query:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC
        MGNSKSKTYKRVLVP++EEQL  IFKSHDRDGDGKL+KEELKQAF+YLGSRFS+FRA+EALR  D + DG ++M EM+KLIQYTK RKYT+C
Subjt:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC

KAG7020566.1 hypothetical protein SDJN02_17252, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-3397.4Show/hide
Query:  VSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC
        +SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTK RKYTIC
Subjt:  VSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC

KAG7020569.1 hypothetical protein SDJN02_17255, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-3379.35Show/hide
Query:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC
        MGN+KS  YKRVLVP +EEQL  IFKSHDRDGDGKLSKEELKQAF+YLGSRFS+FR +EALR  D N DG +SMDEMNKLI+YTKGRKYT+C
Subjt:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC

XP_023538265.1 probable calcium-binding protein CML15 [Cucurbita pepo subsp. pepo]3.1e-3897.65Show/hide
Query:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTK
        MGNSKSKTYKRVLVP+SEEQLLDIFKSHD+DGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTK
Subjt:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTK

TrEMBL top hitse value%identityAlignment
A0A0A0LL93 Uncharacterized protein5.5e-1766.2Show/hide
Query:  VSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKG
        +SEEQL  IFK HD D D KL+KEEL +AF+YLGSR++A R +EA+R VD NHDGV+S+DEM+KLI Y KG
Subjt:  VSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKG

A0A0A0LRB6 Uncharacterized protein1.3e-3178.02Show/hide
Query:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI
        MGNSKSKTYKRVLVP SEEQL ++FK+HDRDGDG L+KEELKQAF YLGSRF  FR EEALR  D N DGV+SMDEM KLI+Y K RKYTI
Subjt:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI

A0A2N9FYQ0 Uncharacterized protein5.0e-1851.72Show/hide
Query:  KSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI
        K  ++KR  +P +EEQL++IFKSHD DGDGKLS++E+K+AF YLGSR+ A+RA +A+   D + DG +  +E+ KL+QY     YTI
Subjt:  KSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI

A0A5A7V5B0 Putative Calcium-binding EF-hand family protein2.7e-3279.12Show/hide
Query:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI
        MGNSKSKTYKRVLVP SEEQL ++FK+HDRDGDG L+KEELKQAF YLGSRFS FR EEALR  D N DGV+SMDEM KLI+Y K RKYTI
Subjt:  MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI

A0A7N2KRS3 Uncharacterized protein1.5e-1955.17Show/hide
Query:  KSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI
        K+  +KR  VP +E+QLL+IFKSHD DGDGKLS++ELK AF YLGSR+ A+R ++ALR  D N DG ++ DE+ KL++Y     YT+
Subjt:  KSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTI

SwissProt top hitse value%identityAlignment
P23286 Calmodulin2.1e-0532.31Show/hide
Query:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        SE ++ + FK  DR+GDGK+S  EL+   + +G + S    ++ ++  D N+DG + + E   L+
Subjt:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

P24044 Calmodulin9.4e-0633.85Show/hide
Query:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        +EE+L++ F+  DRDGDG +S +EL+   + LG + +    +E +R  D + DG ++ +E  K++
Subjt:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

P62203 Calmodulin9.4e-0633.85Show/hide
Query:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        +EE+L++ F+  DRDGDG +S +EL+   + LG + +    +E +R  D + DG ++ +E  K++
Subjt:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

Q9FZ75 Probable calcium-binding protein CML151.9e-0639.71Show/hide
Query:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        V ++ EQLL+IFKS DRDG+G +S  EL  A + +G   +     E ++  D N DGV+S  E   ++
Subjt:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

Q9LI84 Probable calcium-binding protein CML169.4e-0632.35Show/hide
Query:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        V +++EQL+++F+S DRDG+G ++  EL  + + +G   +     E +   D N DGV+S +E + ++
Subjt:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

Arabidopsis top hitse value%identityAlignment
AT1G18530.1 EF hand calcium-binding protein family1.3e-0739.71Show/hide
Query:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        V ++ EQLL+IFKS DRDG+G +S  EL  A + +G   +     E ++  D N DGV+S  E   ++
Subjt:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

AT3G25600.1 Calcium-binding EF-hand family protein6.6e-0732.35Show/hide
Query:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        V +++EQL+++F+S DRDG+G ++  EL  + + +G   +     E +   D N DGV+S +E + ++
Subjt:  VPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

AT3G50770.1 calmodulin-like 411.3e-0538.33Show/hide
Query:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDE
        S+E+L  +F   D DGDGK+S  EL+  F  +G   S   A+EA+  VD + DG +  ++
Subjt:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDE

AT3G51920.1 calmodulin 91.9e-0633.85Show/hide
Query:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI
        + ++L+++F+  DRDGDG +S+ EL +    +G + +A  AE  +R  D + DG +S  E +K++
Subjt:  SEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLI

AT4G12860.1 EF hand calcium-binding protein family2.1e-0534.92Show/hide
Query:  QLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQ
        +L  +F+  D++GDGK++K ELK  F  +G         E +  +D N DG + +DE   L Q
Subjt:  QLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAATTCCAAAAGTAAAACCTACAAACGAGTTCTCGTTCCAGTCTCAGAAGAACAGCTGTTGGATATATTCAAGAGCCACGATCGAGACGGAGACGGGAAGCTATC
AAAGGAGGAATTGAAGCAAGCCTTCAGCTATCTTGGGTCACGTTTTAGTGCCTTTAGAGCTGAAGAAGCCCTACGCACCGTTGATGACAATCATGACGGCGTTGTCAGTA
TGGACGAGATGAACAAGCTAATTCAATATACCAAAGGTCGTAAATACACTATTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAATTCCAAAAGTAAAACCTACAAACGAGTTCTCGTTCCAGTCTCAGAAGAACAGCTGTTGGATATATTCAAGAGCCACGATCGAGACGGAGACGGGAAGCTATC
AAAGGAGGAATTGAAGCAAGCCTTCAGCTATCTTGGGTCACGTTTTAGTGCCTTTAGAGCTGAAGAAGCCCTACGCACCGTTGATGACAATCATGACGGCGTTGTCAGTA
TGGACGAGATGAACAAGCTAATTCAATATACCAAAGGTCGTAAATACACTATTTGTTGA
Protein sequenceShow/hide protein sequence
MGNSKSKTYKRVLVPVSEEQLLDIFKSHDRDGDGKLSKEELKQAFSYLGSRFSAFRAEEALRTVDDNHDGVVSMDEMNKLIQYTKGRKYTIC