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Carg26164 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26164
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionethylene-responsive transcription factor RAP2-1
Genome locationCarg_Chr12:3431372..3431635
RNA-Seq ExpressionCarg26164
SyntenyCarg26164
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020585.1 hypothetical protein SDJN02_17271, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-18100Show/hide
Query:  MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA
        MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA
Subjt:  MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA

KAG7020590.1 hypothetical protein SDJN02_17276, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1798.11Show/hide
Query:  MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA
        MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPD ESSDEA
Subjt:  MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA

XP_008444599.1 PREDICTED: ethylene-responsive transcription factor RAP2-1 [Cucumis melo]3.8e-0990.24Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

XP_023536908.1 ethylene-responsive transcription factor RAP2-1-like [Cucurbita pepo subsp. pepo]2.7e-1092.86Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA
        RAIEVGARVDAAAHHA+QRQSKPISDKPDLNQF D ESSDEA
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA

XP_038884237.1 ethylene-responsive transcription factor RAP2-1-like [Benincasa hispida]3.8e-0990.24Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

TrEMBL top hitse value%identityAlignment
A0A0A0LR87 AP2/ERF domain-containing protein1.2e-0887.8Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESS E
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

A0A1S3BAR1 ethylene-responsive transcription factor RAP2-11.9e-0990.24Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

A0A5A7V5C8 Ethylene-responsive transcription factor RAP2-11.9e-0990.24Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAAH  S RQSKPISDKPDLNQFPD ESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

A0A6J1HCJ9 ethylene-responsive transcription factor RAP2-1-like1.0e-0782.93Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+ ESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

A0A6J1KB24 ethylene-responsive transcription factor RAP2-1-like1.0e-0782.93Show/hide
Query:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE
        RAIEVGARVDAAA+  S RQSKPIS+KPDLNQFP+ ESSDE
Subjt:  RAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCTGCCAGAGCCTACGACATGGTGGTAAGAGCTATTGAGGTCGGTGCTAGAGTCGACGCTGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGA
CAAGCCTGATTTGAACCAGTTTCCGGACCTGGAAAGCTCCGACGAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCTGCCAGAGCCTACGACATGGTGGTAAGAGCTATTGAGGTCGGTGCTAGAGTCGACGCTGCTGCCCACCATGCTTCTCAACGCCAATCCAAACCCATTTCCGA
CAAGCCTGATTTGAACCAGTTTCCGGACCTGGAAAGCTCCGACGAAGCTTGA
Protein sequenceShow/hide protein sequence
MSAARAYDMVVRAIEVGARVDAAAHHASQRQSKPISDKPDLNQFPDLESSDEA