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Carg26241 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26241
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 23-like
Genome locationCarg_Chr13:2113563..2113748
RNA-Seq ExpressionCarg26241
SyntenyCarg26241
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019275.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-20100Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
KAG7036581.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-1995.08Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKI CAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAI SLIGASLLSVAAYY Q
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
XP_022983304.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.2e-1790.16Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS IGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
XP_022998512.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.6e-1996.72Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEM KITCAILFAAATVSAVVAHDEAAAPAPGPTSGAT GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
XP_038905644.1 arabinogalactan protein 23-like [Benincasa hispida]7.5e-1786.89Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKI CA+LFAAATVSA VAHDEA APAPGP+SGA  GLPAIGS+IGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
TrEMBL top hitse value%identityAlignment
A0A5A7U280 Arabinogalactan peptide 237.6e-1583.33Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL
        MEMKKI CAILFAAATVSA VA D+A APAPGP+SGA  GLPAIGSL+GASLLS AAYYL
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL
A0A6J1F209 arabinogalactan peptide 23-like6.2e-1786.89Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKITCA+LFAAATV+A VA +EA+APAPGPTS AT GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
A0A6J1HQG2 arabinogalactan peptide 23-like6.2e-1786.89Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKITCA+LFAAATV+A VA +EA+APAPGPTS AT GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
A0A6J1J6Y9 arabinogalactan peptide 23-like5.6e-1890.16Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS IGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
A0A6J1K873 arabinogalactan peptide 23-like7.8e-2096.72Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
        MEM KITCAILFAAATVSAVVAHDEAAAPAPGPTSGAT GLPAIGSLIGASLLSVAAYYLQ
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 235.2e-1365Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL
        MEMKKI C +LFAAA+++AV+A +E  APAPGP S A+A LPA+GSL+GASL+S+ +YYL
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)6.6e-1162.3Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGP-TSGATAGLPAIGSLIGASLLSVAAYYL
        MEMKKI C ++FAAA+++AV+A  E  APAPGP  SGA+  +PA+GSL+GASL+S+ AYYL
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGP-TSGATAGLPAIGSLIGASLLSVAAYYL
AT3G57690.1 arabinogalactan protein 233.7e-1465Show/hide
Query:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL
        MEMKKI C +LFAAA+++AV+A +E  APAPGP S A+A LPA+GSL+GASL+S+ +YYL
Subjt:  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACTAGCGGAGC
CACCGCCGGGCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACTAGCGGAGC
CACCGCCGGGCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA
Protein sequenceShow/hide protein sequence
MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ