; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg26259 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26259
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPoly(A)-specific ribonuclease
Genome locationCarg_Chr18:7566323..7567165
RNA-Seq ExpressionCarg26259
SyntenyCarg26259
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012717.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-161100Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

XP_022945861.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata]1.6e-15999.29Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

XP_022967098.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]3.1e-15898.21Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN+LNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQK LPNR+DEFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

XP_023541056.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]1.0e-15698.58Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNR-SSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDL
        MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFNALNR SSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDL
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNR-SSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDL

Query:  GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVL
        GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVL
Subjt:  GTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVL

Query:  RVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        RVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Subjt:  RVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

XP_038877224.1 probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]9.7e-13685.36Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV HDLN N+ KSIKIREVWASNLESEFQLIRD ID FPCVSMDTEFPGIVF  P  PFN      SDHY+LLKSNVDAL+LIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        TDD+RFIWEFNFMDFD+ARD++APDSI+LLRRQGIDF+RNRVEGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILTQ+ LP+R+DEFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        V FGDNVYD+KY+MRFC+SLYGGLDRIAK LNVNRAVGKCHQAGSDSLLTWHAFQKMRDT+FVQNE++KHAGVLYGLE F
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

TrEMBL top hitse value%identityAlignment
A0A0A0LYC8 Poly(A)-specific ribonuclease5.8e-12678.93Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        M+ HDLN NH KSI+IREVWASNLESEF+LIRD ID FPCVSMDTEFPG++F     P +      S HY+ LKSNVD L+LIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        T D+RFIWEFNF DFD+ARD++AP+SI+LLRRQGIDFDRNR EGIDS RFAELMMSSGLVCNDSVSWVTFHSAYDF YL+KILT + LP  L++FLGV+R
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        + FGDNVYD+KY+MRFC+SLYGGLDRIAK++NVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQ E+ KHAGVLYGLE F
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

A0A5A7T1W0 Poly(A)-specific ribonuclease9.8e-12678.45Show/hide
Query:  MVSHDLNDNH---YKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLP
        M+ HDLN NH   +K I+IREVWASNL+SEF+LI D ID FPCVSMDTEFPG++F   T P        S HY+ LKSNVD L+LIQIGITLSDSDGNLP
Subjt:  MVSHDLNDNH---YKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLP

Query:  DLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLG
        DLGT D+RFIWEFNF DFD+ARD +APDSI+LLRRQGIDF+RNR EGIDS RFAELMMSSGLVCN+SVSWVTFHSAYDF YL+KILTQ+ LP  L+EFLG
Subjt:  DLGTDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLG

Query:  VLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        V+RV FGDNVYD+KYMMRFC+SLYGGLDRIAK++NVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFV+NE+ KHAGVLYGLE F
Subjt:  VLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

A0A6J1CN71 Poly(A)-specific ribonuclease2.6e-13484.89Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MV  DL +N  K I+IREVWASNLESEF+LIRD ID FPCVSMDTEFPG+VFT P  P++  NR  SDHY+LLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        T  SRFIWEFNFMDFD+ARD++APDSI+LLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDF YL+K+LT++SLP+RL+EFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE
        V FGD VYDVKYMMRFCKSLYGGLDRIAK LNV+RAVGKCHQAGSDSLLTWHAFQKMRDT+FVQN +EKHAGVLYGLE
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLE

A0A6J1G223 Poly(A)-specific ribonuclease8.0e-16099.29Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

A0A6J1HU54 Poly(A)-specific ribonuclease1.5e-15898.21Show/hide
Query:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
        MVSHDLN+NHYKSIKIREVWASNLESEFQLIRD IDHFPCVSMDTEFPGIVFTAPTAPFN+LNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG
Subjt:  MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLG

Query:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR
        TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQK LPNR+DEFLGVLR
Subjt:  TDDSRFIWEFNFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLR

Query:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
Subjt:  VLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

SwissProt top hitse value%identityAlignment
Q9FMS6 Probable CCR4-associated factor 1 homolog 111.4e-10568.89Show/hide
Query:  IKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKLLKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFN
        I IR+VWA NLESEF LIR  ++ +P +SMDTEFPG+++    A  + L R + ++ Y LLKSNVDAL+LIQ+G+TLSD+DGNLPDL G  + R+IWEFN
Subjt:  IKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKLLKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFN

Query:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK
        F DFD+ RD +APDSI+LLRR GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  L EFLG+LR  FGD VYDVK
Subjt:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK

Query:  YMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        ++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLTW AFQ+MRD +FV++  EKHAGVLYGLE F
Subjt:  YMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

Q9LEU4 Probable CCR4-associated factor 1 homolog 104.9e-7454.34Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF
        SI IREVW  NL  EF LIR+ +D F  ++MDTEFPG+V   P A F   N     +Y+ LK NVD L LIQ+G+T SD +GNLP  GT D   IW+FNF
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF

Query:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY
         +F++  DIYA +SI+LLR+ GIDF +N  +GID  RF ELMMSSG+V ND++SWVTFH  YDF YL+K+LT K LP +  +F  +L V F   VYD+K+
Subjt:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY

Query:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL
        +M FC  L+GGL+R+A+ + V R VG CHQAGSDSLLT  +F+K+++ +F     EK+ GVLYGL
Subjt:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL

Q9LXM2 Probable CCR4-associated factor 1 homolog 93.5e-10468.52Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFN
        ++  REVWA NLESEF+LI + ID +P +SMDTEFPG++F +     N       D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFN
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFN

Query:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK
        F DFD+ARD +APDSI+LLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  L EF  V+RVLFG+ VYDVK
Subjt:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK

Query:  YMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        +MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLTWHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Subjt:  YMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

Q9SAI2 Probable CCR4-associated factor 1 homolog 61.8e-7653.96Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF
        SI+IREVW  NL+ E  LIRD +D FP V+MDTEFPGIV      P      ++  HY+ LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF

Query:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY
         +FDL  DI+A DSI+LL++ GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+   +F  ++ V F   VYD+K+
Subjt:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY

Query:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL
        +M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT   F+K+++ FFV   + K++GVLYGL
Subjt:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL

Q9SKZ2 Probable CCR4-associated factor 1 homolog 73.0e-7955.85Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF
        SI+IREVW  NLESE  LIR+ +D FP V+MDTEFPGIV      P      ++  HY+ LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF

Query:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY
         +FDL  DIYA DSI+LLR+ GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP     F  ++ V F   VYD+K+
Subjt:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY

Query:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL
        +M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT   F+K+++ FF+   +EK++GVLYGL
Subjt:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-7753.96Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF
        SI+IREVW  NL+ E  LIRD +D FP V+MDTEFPGIV      P      ++  HY+ LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF

Query:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY
         +FDL  DI+A DSI+LL++ GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+   +F  ++ V F   VYD+K+
Subjt:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY

Query:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL
        +M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT   F+K+++ FFV   + K++GVLYGL
Subjt:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-7753.96Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF
        SI+IREVW  NL+ E  LIRD +D FP V+MDTEFPGIV      P      ++  HY+ LK+NV+ L +IQ+G+T S+  GNLP  GT D   IW+FNF
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF

Query:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY
         +FDL  DI+A DSI+LL++ GID  +N ++GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP+   +F  ++ V F   VYD+K+
Subjt:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY

Query:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL
        +M+FC SL+GGL+++A+ L V R VG CHQAGSDSLLT   F+K+++ FFV   + K++GVLYGL
Subjt:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-8055.85Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF
        SI+IREVW  NLESE  LIR+ +D FP V+MDTEFPGIV      P      ++  HY+ LK+NV+ L +IQ+G+T SD  GNLP  GTD+   IW+FNF
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNF

Query:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY
         +FDL  DIYA DSI+LLR+ GIDF +N   GIDS RFAEL+MSSG+V N++V WVTFHS YDF YL+K+LT ++LP     F  ++ V F   VYD+K+
Subjt:  MDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKY

Query:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL
        +M+FC SL+GGL+++A+ L+V R VG CHQAGSDSLLT   F+K+++ FF+   +EK++GVLYGL
Subjt:  MMRFCKSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGL

AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-10568.52Show/hide
Query:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFN
        ++  REVWA NLESEF+LI + ID +P +SMDTEFPG++F +     N       D Y LLK+NVDAL+LIQ+G+TLSD +GNLPDLG D  R FIWEFN
Subjt:  SIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSR-FIWEFN

Query:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK
        F DFD+ARD +APDSI+LLRRQGIDF+RN  +G++S RFAELMMSSGLVCN+ VSWVTFHSAYDF YL+KILT++ LP  L EF  V+RVLFG+ VYDVK
Subjt:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK

Query:  YMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        +MM+FC + L+GGLDR+A++L VNRAVGKCHQAGSDSLLTWHAFQ+MRD +FVQ+  EKHAGVLYGLE F
Subjt:  YMMRFC-KSLYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF

AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-10668.89Show/hide
Query:  IKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKLLKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFN
        I IR+VWA NLESEF LIR  ++ +P +SMDTEFPG+++    A  + L R + ++ Y LLKSNVDAL+LIQ+G+TLSD+DGNLPDL G  + R+IWEFN
Subjt:  IKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDH-YKLLKSNVDALNLIQIGITLSDSDGNLPDL-GTDDSRFIWEFN

Query:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK
        F DFD+ RD +APDSI+LLRR GIDF+RNR EG++S RFAELMMSSGL+CN+SVSWVTFHSAYDF YL+KILT++ LP  L EFLG+LR  FGD VYDVK
Subjt:  FMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVK

Query:  YMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF
        ++MRFC+  LYGGLDR+A+SL VNRAVGKCHQAGSDSLLTW AFQ+MRD +FV++  EKHAGVLYGLE F
Subjt:  YMMRFCKS-LYGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGCCACGATCTCAACGACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTCGATCGATCA
CTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCA
AATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTT
AACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTC
GTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGA
CTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTG
TACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAATGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGAT
GAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTCTTGTATGGATTGGAGGCGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGCCACGATCTCAACGACAATCACTACAAATCCATCAAAATCCGTGAAGTTTGGGCCTCCAATCTCGAATCTGAGTTCCAGTTGATCCGCGATTCGATCGATCA
CTTTCCTTGCGTTTCAATGGACACTGAGTTCCCCGGAATCGTTTTCACCGCTCCAACCGCGCCTTTCAACGCTCTAAATCGCTCCTCCTCTGATCACTACAAACTCCTCA
AATCCAACGTCGATGCTCTCAATCTCATACAGATCGGTATCACTCTCTCCGATTCCGATGGAAATTTACCAGATCTCGGCACCGATGATAGCCGATTCATTTGGGAGTTT
AACTTCATGGATTTCGATCTAGCGCGTGACATCTACGCGCCTGATTCAATCGACCTTCTCCGCCGTCAGGGCATCGATTTTGACCGGAACCGCGTGGAAGGAATCGACTC
GTGCCGATTTGCCGAGTTGATGATGTCGTCGGGACTCGTTTGTAATGACTCAGTGAGTTGGGTGACGTTTCACAGCGCGTATGACTTCGCGTATTTGATTAAGATTCTGA
CTCAGAAGAGCCTTCCTAATCGGCTGGATGAATTCCTCGGCGTTCTAAGGGTTTTATTCGGCGATAACGTGTACGATGTGAAGTACATGATGCGGTTCTGCAAGAGCCTG
TACGGCGGGTTGGACCGGATAGCGAAGAGTTTGAATGTGAACCGGGCGGTTGGGAAATGCCATCAGGCCGGTTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGAT
GAGGGACACGTTTTTTGTACAGAATGAGGTGGAGAAACATGCGGGTGTCTTGTATGGATTGGAGGCGTTCTGA
Protein sequenceShow/hide protein sequence
MVSHDLNDNHYKSIKIREVWASNLESEFQLIRDSIDHFPCVSMDTEFPGIVFTAPTAPFNALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEF
NFMDFDLARDIYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLIKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSL
YGGLDRIAKSLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF