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Carg26268 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg26268
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGrowth-regulating factor
Genome locationCarg_Chr18:7457300..7457677
RNA-Seq ExpressionCarg26268
SyntenyCarg26268
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0099402 - plant organ development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR014978 - Glutamine-Leucine-Glutamine, QLQ
IPR031137 - Growth-regulating factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012709.1 Growth-regulating factor 5 [Cucurbita argyrosperma subsp. argyrosperma]7.5e-38100Show/hide
Query:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARWMELFANGLREENRP
        MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARWMELFANGLREENRP
Subjt:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARWMELFANGLREENRP

KAG7021343.1 Growth-regulating factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2593.44Show/hide
Query:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
        MSGGRNR PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI+TTS HSPF+STLFPHQYA
Subjt:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA

XP_023537378.1 growth-regulating factor 5-like isoform X1 [Cucurbita pepo subsp. pepo]7.7e-2798.36Show/hide
Query:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
        MSGGRNR PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
Subjt:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA

XP_023537380.1 growth-regulating factor 5-like isoform X2 [Cucurbita pepo subsp. pepo]7.7e-2798.36Show/hide
Query:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
        MSGGRNR PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
Subjt:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA

XP_023537381.1 growth-regulating factor 1-like isoform X3 [Cucurbita pepo subsp. pepo]7.7e-2798.36Show/hide
Query:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
        MSGGRNR PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
Subjt:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA

TrEMBL top hitse value%identityAlignment
A0A0A0LFP9 Growth-regulating factor1.6e-1776.79Show/hide
Query:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY
        RNR PFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TS  +PFIS LFPHQY
Subjt:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY

A0A1S4E0W0 Growth-regulating factor1.6e-1776.79Show/hide
Query:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY
        RNR PFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TS  +PFIS LFPHQY
Subjt:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY

A0A1S4E0W5 Growth-regulating factor1.6e-1776.79Show/hide
Query:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY
        RNR PFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TS  +PFIS LFPHQY
Subjt:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY

A0A5A7V1P5 Growth-regulating factor1.6e-1776.79Show/hide
Query:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY
        RNR PFTAAQWQELEHQALIFKYM SG+P+PP LL++I  TS  +PFIS LFPHQY
Subjt:  RNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQY

A0A6J1G0A4 Growth-regulating factor9.2e-2696.72Show/hide
Query:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
        MSGGRNRLPFTAAQWQELE QALIFKYM SGIPLPPHLLFTINTTSFHSPFISTLFPHQYA
Subjt:  MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYA

SwissProt top hitse value%identityAlignment
A2XA73 Growth-regulating factor 15.8e-0953.23Show/hide
Query:  GRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLL------FTINTTSFHSPFISTLFPHQ
        G  R PFTA+QWQELEHQALI+KYMASG P+P  L+      F +++    SP  S  FP Q
Subjt:  GRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLL------FTINTTSFHSPFISTLFPHQ

Q6AWY7 Growth-regulating factor 24.4e-0972.97Show/hide
Query:  GGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLL
        GG  R  FTA QWQELEHQALI+KYMA+G P+PP LL
Subjt:  GGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLL

Q6AWY8 Growth-regulating factor 15.8e-0953.23Show/hide
Query:  GRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLL------FTINTTSFHSPFISTLFPHQ
        G  R PFTA+QWQELEHQALI+KYMASG P+P  L+      F +++    SP  S  FP Q
Subjt:  GRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLL------FTINTTSFHSPFISTLFPHQ

Q8L8A6 Growth-regulating factor 52.5e-1254.69Show/hide
Query:  SGGR--NRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARW
        S GR   R PFT  QW+ELEHQALI+KYM SG+P+PP L+F+I   S  +  +S L PHQ   W
Subjt:  SGGR--NRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARW

Q9ZQ12 Growth-regulating factor 66.8e-1050Show/hide
Query:  RLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI----------NTTSFHSPFISTLFPH
        R+PFT +QW+ELE+QAL+FKY+A+ +P+PPHLLF I          +++S  S F  TL PH
Subjt:  RLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI----------NTTSFHSPFISTLFPH

Arabidopsis top hitse value%identityAlignment
AT2G06200.1 growth-regulating factor 64.9e-1150Show/hide
Query:  RLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI----------NTTSFHSPFISTLFPH
        R+PFT +QW+ELE+QAL+FKY+A+ +P+PPHLLF I          +++S  S F  TL PH
Subjt:  RLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTI----------NTTSFHSPFISTLFPH

AT2G22840.1 growth-regulating factor 11.8e-0546.15Show/hide
Query:  PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSF
        PF+  QW ELE QALI+KY+ + +P+P  LL ++  + F
Subjt:  PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSF

AT3G13960.1 growth-regulating factor 51.8e-1354.69Show/hide
Query:  SGGR--NRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARW
        S GR   R PFT  QW+ELEHQALI+KYM SG+P+PP L+F+I   S  +  +S L PHQ   W
Subjt:  SGGR--NRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARW

AT3G52910.1 growth-regulating factor 46.2e-0642.62Show/hide
Query:  FTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFH-SPF------ISTLFPHQYARW
        F+ AQWQELE QALI++YM +G  +P  LL  I  +  H SP       +   FPH    W
Subjt:  FTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFH-SPF------ISTLFPHQYARW

AT4G37740.1 growth-regulating factor 28.0e-0648.72Show/hide
Query:  PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSF
        PFT  QW ELE QALI+KY+ + +P+P  LL +I  + +
Subjt:  PFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGAGGAAGAAACAGGCTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCACCCCA
TCTGCTCTTCACCATCAACACAACCTCTTTCCACTCTCCTTTCATTTCCACCCTCTTTCCCCACCAATATGCACGTTGGATGGAACTATTTGCAAATGGGTTACGGGAGG
AAAATCGACCCTAA
mRNA sequenceShow/hide mRNA sequence
AGGCAATGAGCGGAGGAAGAAACAGGCTTCCATTCACTGCAGCTCAGTGGCAAGAGCTGGAGCACCAAGCCCTCATCTTCAAGTACATGGCCTCCGGCATCCCTCTCCCA
CCCCATCTGCTCTTCACCATCAACACAACCTCTTTCCACTCTCCTTTCATTTCCACCCTCTTTCCCCACCAATATGCACGTTGGATGGAACTATTTGCAAATGGGTTACG
GGAGGAAAATCGACCCTAAGCCTAGAAGGTGCAGAAGAACAGACGGCAAAAAATGGCGATGCTCCAAAGAGGCATTCC
Protein sequenceShow/hide protein sequence
MSGGRNRLPFTAAQWQELEHQALIFKYMASGIPLPPHLLFTINTTSFHSPFISTLFPHQYARWMELFANGLREENRP